Variant report

Variant	rs16905644
Chromosome Location	chr9:22097022-22097023
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:22095565..22097696-chr9:22107137..22108980,2	MCF-7	breast:
2	chr9:22078947..22090885-chr9:22096375..22111093,52	MCF-7	breast:
3	chr9:22089007..22090799-chr9:22096487..22099589,3	MCF-7	breast:
4	chr9:22096125..22098594-chr9:22238044..22240810,3	MCF-7	breast:
5	chr9:22038257..22040958-chr9:22096182..22098663,2	MCF-7	breast:
6	chr9:22083098..22086682-chr9:22096423..22099338,3	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10217720	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16905635	1.00[AMR][1000 genomes]
rs66735603	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72654222	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72654246	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72654298	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73448370	0.91[AMR][1000 genomes]
rs7855190	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7869527	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv531617	chr9:21985057-22809676	Genic enhancers Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:22080600-22098600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr9:22086000-22097200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:22096000-22099600	Enhancers	Hela-S3	cervix
4	chr9:22096200-22097800	Strong transcription	Dnd41	blood
5	chr9:22096400-22097400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:22096400-22097400	Weak transcription	NHLF	lung
7	chr9:22096400-22097600	Enhancers	Placenta	Placenta
8	chr9:22096400-22098000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr9:22096400-22099400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr9:22096600-22098000	Enhancers	Fetal Intestine Large	intestine
11	chr9:22096600-22099600	Enhancers	Fetal Intestine Small	intestine
12	chr9:22096800-22097200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr9:22096800-22098000	Enhancers	Placenta Amnion	Placenta Amnion
14	chr9:22096800-22098400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:22096800-22098800	Enhancers	Duodenum Mucosa	Duodenum
16	chr9:22096800-22099400	Enhancers	HSMM	muscle
17	chr9:22097000-22098000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr9:22097000-22098000	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr9:22097000-22098200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr9:22097000-22099000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr9:22097000-22099400	Enhancers	NHDF-Ad	bronchial

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