Variant report

Variant	rs734526
Chromosome Location	chr4:7597452-7597453
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:7593992..7597471-chr4:7599125..7601192,3	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10022225	0.90[JPT][hapmap]
rs1015524	0.89[ASN][1000 genomes]
rs10937840	0.87[ASN][1000 genomes]
rs11721619	0.85[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs11728631	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs11731047	0.85[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs11735301	0.85[JPT][hapmap]
rs11942830	0.80[CHB][hapmap];0.85[JPT][hapmap]
rs11943985	0.80[JPT][hapmap]
rs13122192	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs17465228	0.86[ASN][1000 genomes]
rs4689789	0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs4689791	0.90[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs6853188	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916610	chr4:7238883-7731946	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv593569	chr4:7291363-7626136	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1011547	chr4:7318232-7637410	Active TSS ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv537017	chr4:7318232-7637410	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	esv34156	chr4:7526515-7750588	Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv878570	chr4:7534603-7836835	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv461212	chr4:7572718-7620195	Bivalent Enhancer Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv593617	chr4:7572718-7620195	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
10	nsv461213	chr4:7584560-7637297	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv593618	chr4:7584560-7637297	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv508272	chr4:7591967-7722112	Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7594400-7597600	Weak transcription	Brain Angular Gyrus	brain
2	chr4:7594400-7599600	Enhancers	Brain Germinal Matrix	brain
3	chr4:7595200-7597800	Enhancers	Fetal Brain Male	brain
4	chr4:7595200-7599600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:7596000-7599200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr4:7596200-7598000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:7596600-7597800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr4:7596600-7598800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr4:7596800-7597600	Weak transcription	Right Ventricle	heart
10	chr4:7596800-7597800	Enhancers	H9 Cell Line	embryonic stem cell
11	chr4:7596800-7598000	Enhancers	Brain Hippocampus Middle	brain
12	chr4:7596800-7599600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr4:7596800-7600000	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr4:7596800-7600400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr4:7597000-7597600	Enhancers	Fetal Brain Female	brain
16	chr4:7597000-7598200	Enhancers	Brain Substantia Nigra	brain
17	chr4:7597000-7598600	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr4:7597000-7599000	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr4:7597200-7597600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr4:7597200-7597800	Enhancers	NH-A	brain
21	chr4:7597200-7598400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
22	chr4:7597400-7597600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr4:7597400-7598000	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr4:7597400-7598000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr4:7597400-7598200	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr4:7597400-7598600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr4:7597400-7598600	Enhancers	Brain Cingulate Gyrus	brain
28	chr4:7597400-7598800	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr4:7597400-7599000	Enhancers	Brain Anterior Caudate	brain

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