Variant report
| Variant | rs73455806 |
|---|---|
| Chromosome Location | chr7:127830028-127830029 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:127827828..127830666-chr7:127840693..127843481,3 | K562 | blood: | |
| 2 | chr7:127791935..127793463-chr7:127829513..127831967,2 | MCF-7 | breast: | |
| 3 | chr7:127822941..127825146-chr7:127829078..127832081,3 | K562 | blood: | |
| 4 | chr7:127822941..127826009-chr7:127829078..127832030,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs56048330 | 1.00[AMR][1000 genomes] |
| rs56285353 | 1.00[AMR][1000 genomes] |
| rs57764135 | 1.00[AMR][1000 genomes] |
| rs59265323 | 1.00[AMR][1000 genomes] |
| rs712722 | 1.00[AMR][1000 genomes] |
| rs73721303 | 1.00[AMR][1000 genomes] |
| rs73723829 | 1.00[AMR][1000 genomes] |
| rs73723832 | 1.00[AMR][1000 genomes] |
| rs73723835 | 1.00[AMR][1000 genomes] |
| rs73723836 | 1.00[AMR][1000 genomes] |
| rs73723837 | 1.00[AMR][1000 genomes] |
| rs73723838 | 1.00[AMR][1000 genomes] |
| rs73723839 | 1.00[AMR][1000 genomes] |
| rs73723841 | 1.00[AMR][1000 genomes] |
| rs73723842 | 1.00[AMR][1000 genomes] |
| rs7785591 | 1.00[AMR][1000 genomes] |
| rs791599 | 1.00[AMR][1000 genomes] |
| rs791615 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1022385 | chr7:127246656-127971194 | Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| 2 | nsv539120 | chr7:127246656-127971194 | Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| 3 | esv33413 | chr7:127800064-127929303 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:127828800-127832400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
