Variant report

Variant	rs791599
Chromosome Location	chr7:127865231-127865232
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs56048330	1.00[AMR][1000 genomes]
rs56285353	1.00[AMR][1000 genomes]
rs57764135	1.00[AMR][1000 genomes]
rs59265323	1.00[AMR][1000 genomes]
rs712722	1.00[AMR][1000 genomes]
rs73455806	1.00[AMR][1000 genomes]
rs73721303	1.00[AMR][1000 genomes]
rs73723829	1.00[AMR][1000 genomes]
rs73723832	1.00[AMR][1000 genomes]
rs73723835	1.00[AMR][1000 genomes]
rs73723836	1.00[AMR][1000 genomes]
rs73723837	1.00[AMR][1000 genomes]
rs73723838	1.00[AMR][1000 genomes]
rs73723839	1.00[AMR][1000 genomes]
rs73723841	1.00[AMR][1000 genomes]
rs73723842	1.00[AMR][1000 genomes]
rs7785591	1.00[AMR][1000 genomes]
rs791598	0.81[AFR][1000 genomes]
rs791615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	esv33413	chr7:127800064-127929303	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv5945	chr7:127852004-127880768	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv429811	chr7:127857891-127889049	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv3437573	chr7:127864416-127868714	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127844000-127875600	Weak transcription	Right Atrium	heart
2	chr7:127850000-127867400	Weak transcription	Spleen	Spleen
3	chr7:127863200-127867400	Weak transcription	Primary B cells from cord blood	blood
4	chr7:127863400-127867400	Weak transcription	Adipose Nuclei	Adipose
5	chr7:127863600-127865600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr7:127863600-127867000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr7:127863600-127867000	Weak transcription	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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