Variant report

Variant	rs73457193
Chromosome Location	chr6:56114112-56114113
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11964676	1.00[AMR][1000 genomes]
rs11966534	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11968429	1.00[AMR][1000 genomes]
rs6904082	1.00[AMR][1000 genomes]
rs6924924	1.00[AMR][1000 genomes]
rs73459019	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73459023	1.00[AMR][1000 genomes]
rs73459047	1.00[AMR][1000 genomes]
rs73459053	1.00[AMR][1000 genomes]
rs73459076	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56112800-56115200	Weak transcription	Lung	lung
2	chr6:56112800-56115200	Weak transcription	Pancreas	Pancrea
3	chr6:56112800-56116600	Weak transcription	Psoas Muscle	Psoas
4	chr6:56113000-56114800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:56113000-56120200	Weak transcription	Aorta	Aorta
6	chr6:56113200-56114200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:56113200-56117000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:56113400-56115000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr6:56113400-56116600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:56113400-56116800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr6:56113400-56123800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr6:56113600-56117200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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