Variant report

Variant	rs73459207
Chromosome Location	chr7:138470674-138470675
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:138470631..138471174-chr7:138550346..138550932,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1901247	1.00[EUR][1000 genomes]
rs28503872	1.00[EUR][1000 genomes]
rs58440371	1.00[EUR][1000 genomes]
rs60569142	1.00[EUR][1000 genomes]
rs6956608	1.00[EUR][1000 genomes]
rs6976485	1.00[EUR][1000 genomes]
rs73730411	1.00[EUR][1000 genomes]
rs73730416	1.00[EUR][1000 genomes]
rs73730418	1.00[EUR][1000 genomes]
rs73730423	1.00[EUR][1000 genomes]
rs73730424	1.00[EUR][1000 genomes]
rs73730425	1.00[EUR][1000 genomes]
rs73730427	1.00[EUR][1000 genomes]
rs7790139	1.00[EUR][1000 genomes]
rs9692528	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831154	chr7:138470488-138674113	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138468400-138470800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:138469400-138471000	Enhancers	HMEC	breast
3	chr7:138469600-138471000	Enhancers	Placenta Amnion	Placenta Amnion
4	chr7:138470200-138471000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:138470200-138471600	Enhancers	Placenta	Placenta
6	chr7:138470400-138470800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr7:138470400-138471000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:138470400-138471000	Enhancers	H9 Cell Line	embryonic stem cell
9	chr7:138470400-138471000	Enhancers	HepG2	liver
10	chr7:138470400-138471200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr7:138470400-138471400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:138470600-138470800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr7:138470600-138470800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:138470600-138471000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:138470600-138471000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr7:138470600-138471000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr7:138470600-138471000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr7:138470600-138471000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr7:138470600-138471000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr7:138470600-138471000	Flanking Active TSS	A549	lung
21	chr7:138470600-138471000	Flanking Active TSS	Hela-S3	cervix
22	chr7:138470600-138471000	Enhancers	NHEK	skin
23	chr7:138470600-138471000	Enhancers	Osteobl	bone

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