Variant report

Variant	rs9692528
Chromosome Location	chr7:138439776-138439777
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:138439716..138443389-chr7:138456153..138459684,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000105929	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10261133	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs12112949	1.00[TSI][hapmap]
rs1901247	1.00[EUR][1000 genomes]
rs28503872	1.00[EUR][1000 genomes]
rs3807152	1.00[TSI][hapmap]
rs58440371	1.00[EUR][1000 genomes]
rs60569142	1.00[EUR][1000 genomes]
rs6956608	1.00[EUR][1000 genomes]
rs6976485	1.00[EUR][1000 genomes]
rs73459207	1.00[EUR][1000 genomes]
rs73730411	1.00[EUR][1000 genomes]
rs73730416	1.00[EUR][1000 genomes]
rs73730418	1.00[EUR][1000 genomes]
rs73730423	1.00[EUR][1000 genomes]
rs73730424	1.00[EUR][1000 genomes]
rs73730425	1.00[EUR][1000 genomes]
rs73730427	1.00[EUR][1000 genomes]
rs7790139	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138429800-138440600	Enhancers	Fetal Thymus	thymus
2	chr7:138435800-138440200	Weak transcription	Fetal Intestine Large	intestine
3	chr7:138436000-138439800	Weak transcription	Fetal Lung	lung
4	chr7:138436000-138440000	Weak transcription	Fetal Intestine Small	intestine
5	chr7:138436000-138440200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:138437400-138439800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr7:138437600-138440000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:138437600-138440000	Weak transcription	HMEC	breast
9	chr7:138437800-138439800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:138437800-138440200	Weak transcription	Brain Hippocampus Middle	brain
11	chr7:138438000-138439800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr7:138438000-138440000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:138438000-138440600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr7:138438200-138439800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr7:138438200-138439800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr7:138438200-138439800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:138438200-138440000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr7:138438200-138440000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr7:138438200-138440000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr7:138438200-138440200	Weak transcription	Fetal Muscle Leg	muscle
21	chr7:138438200-138440200	Weak transcription	Lung	lung
22	chr7:138438400-138439800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr7:138438600-138439800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr7:138438600-138439800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr7:138438800-138439800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr7:138438800-138439800	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr7:138438800-138439800	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr7:138438800-138439800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr7:138438800-138439800	Weak transcription	Hela-S3	cervix
30	chr7:138438800-138440200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr7:138438800-138440200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr7:138438800-138442200	Weak transcription	Dnd41	blood
33	chr7:138439000-138441400	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr7:138439000-138441400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr7:138439200-138440200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr7:138439400-138440800	Enhancers	Placenta	Placenta
37	chr7:138439600-138440600	Enhancers	Thymus	Thymus
38	chr7:138439600-138442000	Enhancers	HepG2	liver
39	chr7:138439600-138442200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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