Variant report

Variant	rs3807152
Chromosome Location	chr7:138417887-138417888
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12112949	1.00[TSI][hapmap]
rs13246226	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13246294	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28691054	1.00[EUR][1000 genomes]
rs3807149	1.00[EUR][1000 genomes]
rs56317995	1.00[EUR][1000 genomes]
rs56983691	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6972218	1.00[EUR][1000 genomes]
rs73730479	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73730493	1.00[EUR][1000 genomes]
rs9692528	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138400600-138439000	Weak transcription	Right Atrium	heart
2	chr7:138403400-138420200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:138414400-138418200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:138414800-138425800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:138417800-138418200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:138417800-138418200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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