Variant report

Variant	rs73460318
Chromosome Location	chr6:74475244-74475245
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:74475228..74477376-chr6:74479423..74481434,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs60317822	1.00[AMR][1000 genomes]
rs60855681	1.00[AMR][1000 genomes]
rs61440772	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73458377	1.00[AMR][1000 genomes]
rs73458391	1.00[AMR][1000 genomes]
rs73458392	1.00[AMR][1000 genomes]
rs73458397	1.00[AMR][1000 genomes]
rs73460308	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73460310	1.00[AMR][1000 genomes]
rs73460314	1.00[AMR][1000 genomes]
rs73460323	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73460325	1.00[AMR][1000 genomes]
rs73460327	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73460372	1.00[AMR][1000 genomes]
rs73460378	1.00[AMR][1000 genomes]
rs73462427	1.00[AMR][1000 genomes]
rs73462435	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027968	chr6:74155378-74521923	Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
2	nsv538305	chr6:74155378-74521923	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
3	nsv1023250	chr6:74189642-74605976	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
4	nsv538306	chr6:74189642-74605976	Strong transcription Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
5	nsv463154	chr6:74412048-74775904	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv603695	chr6:74412048-74775904	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv528148	chr6:74468860-74493432	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74425200-74475800	Weak transcription	Hela-S3	cervix
2	chr6:74425400-74483200	Weak transcription	A549	lung
3	chr6:74435800-74475400	Weak transcription	Primary T cells from cord blood	blood
4	chr6:74438400-74527200	Weak transcription	Esophagus	oesophagus
5	chr6:74441400-74544400	Weak transcription	Aorta	Aorta
6	chr6:74442400-74493400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:74443400-74484000	Weak transcription	Left Ventricle	heart
8	chr6:74444000-74498600	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:74448800-74483400	Weak transcription	NHEK	skin
10	chr6:74453600-74479400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:74456800-74483800	Weak transcription	NHLF	lung
12	chr6:74457200-74484000	Weak transcription	Adipose Nuclei	Adipose
13	chr6:74457400-74475400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:74457800-74477600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:74465200-74484800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:74467400-74486200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:74468000-74492200	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr6:74469800-74475600	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr6:74469800-74483600	Weak transcription	Fetal Lung	lung
20	chr6:74469800-74502800	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr6:74470200-74484000	Weak transcription	Right Ventricle	heart
22	chr6:74471400-74483800	Weak transcription	NH-A	brain
23	chr6:74471800-74486600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:74472000-74482800	Strong transcription	NHDF-Ad	bronchial
25	chr6:74472200-74481800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:74472400-74475600	Weak transcription	Osteobl	bone
27	chr6:74472600-74476200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:74472600-74477600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:74472600-74481800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:74472800-74479800	Strong transcription	HMEC	breast
31	chr6:74473000-74477800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr6:74473000-74481600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr6:74473200-74483600	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr6:74473400-74476000	Strong transcription	Placenta Amnion	Placenta Amnion
35	chr6:74473400-74478200	Weak transcription	HUVEC	blood vessel
36	chr6:74473600-74475600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:74473600-74477400	Strong transcription	Primary hematopoietic stem cells	blood
38	chr6:74474000-74475400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr6:74474000-74483800	Weak transcription	Colon Smooth Muscle	Colon
40	chr6:74474000-74489400	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr6:74474200-74478200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr6:74474200-74484000	Weak transcription	Rectal Smooth Muscle	rectum
43	chr6:74474600-74476000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr6:74474600-74476000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:74474800-74498200	Weak transcription	Stomach Smooth Muscle	stomach
46	chr6:74475200-74476000	Strong transcription	HSMM	muscle
47	chr6:74475200-74513600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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