Variant report

Variant	rs73460327
Chromosome Location	chr6:74484508-74484509
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:74482061..74484557-chr6:74512371..74514530,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs60317822	1.00[AMR][1000 genomes]
rs60855681	1.00[AMR][1000 genomes]
rs61440772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73458377	1.00[AMR][1000 genomes]
rs73458391	1.00[AMR][1000 genomes]
rs73458392	1.00[AMR][1000 genomes]
rs73458397	1.00[AMR][1000 genomes]
rs73460308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73460310	1.00[AMR][1000 genomes]
rs73460314	1.00[AMR][1000 genomes]
rs73460318	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73460323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73460325	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73460372	1.00[AMR][1000 genomes]
rs73460378	1.00[AMR][1000 genomes]
rs73462427	1.00[AMR][1000 genomes]
rs73462435	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027968	chr6:74155378-74521923	Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
2	nsv538305	chr6:74155378-74521923	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
3	nsv1023250	chr6:74189642-74605976	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
4	nsv538306	chr6:74189642-74605976	Strong transcription Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
5	nsv463154	chr6:74412048-74775904	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv603695	chr6:74412048-74775904	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv528148	chr6:74468860-74493432	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74438400-74527200	Weak transcription	Esophagus	oesophagus
2	chr6:74441400-74544400	Weak transcription	Aorta	Aorta
3	chr6:74442400-74493400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr6:74444000-74498600	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:74465200-74484800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:74467400-74486200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:74468000-74492200	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr6:74469800-74502800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr6:74471800-74486600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:74474000-74489400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:74474800-74498200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr6:74475200-74513600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr6:74476000-74491200	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr6:74476000-74510800	Weak transcription	Fetal Heart	heart
15	chr6:74477400-74543400	Weak transcription	Lung	lung
16	chr6:74480000-74490600	Weak transcription	Primary T cells from cord blood	blood
17	chr6:74480200-74493800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr6:74481800-74490600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr6:74483200-74484600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
20	chr6:74483200-74484800	Enhancers	NHDF-Ad	bronchial
21	chr6:74483400-74484600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:74483400-74484600	Flanking Active TSS	A549	lung
23	chr6:74483400-74484600	Enhancers	HUVEC	blood vessel
24	chr6:74483400-74484600	Enhancers	NHEK	skin
25	chr6:74483400-74484800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:74483400-74484800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:74483400-74484800	Enhancers	HMEC	breast
28	chr6:74483400-74485400	Enhancers	Liver	Liver
29	chr6:74483600-74484800	Enhancers	Muscle Satellite Cultured Cells	--
30	chr6:74483800-74484600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:74483800-74484800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:74483800-74484800	Enhancers	Hela-S3	cervix
33	chr6:74483800-74484800	Enhancers	NHLF	lung
34	chr6:74484000-74484600	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr6:74484000-74484600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:74484000-74484600	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr6:74484000-74484600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr6:74484000-74484600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr6:74484000-74484600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr6:74484000-74484600	Enhancers	Placenta	Placenta
41	chr6:74484000-74484600	Enhancers	Left Ventricle	heart
42	chr6:74484000-74484600	Enhancers	Right Atrium	heart
43	chr6:74484000-74484600	Enhancers	Right Ventricle	heart
44	chr6:74484000-74484800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr6:74484000-74484800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr6:74484000-74484800	Enhancers	Adipose Nuclei	Adipose
47	chr6:74484000-74484800	Enhancers	HSMM	muscle
48	chr6:74484000-74484800	Flanking Active TSS	NH-A	brain
49	chr6:74484200-74484600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr6:74484200-74484600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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