Variant report

Variant	rs73466901
Chromosome Location	chr13:40131637-40131638
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1002461	1.00[EUR][1000 genomes]
rs17060174	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17060332	1.00[EUR][1000 genomes]
rs9315699	0.98[ASN][1000 genomes]
rs9566449	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9566450	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9566453	0.98[ASN][1000 genomes]
rs9566454	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9576829	1.00[EUR][1000 genomes]
rs9576830	1.00[EUR][1000 genomes]
rs9576831	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9576832	0.94[ASN][1000 genomes]
rs9576833	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9576834	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9576835	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9576836	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9576837	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9576840	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9576841	0.98[ASN][1000 genomes]
rs9576842	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9576843	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9576854	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576861	1.00[EUR][1000 genomes]
rs9576862	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:40107800-40140200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr13:40111200-40133200	Weak transcription	Aorta	Aorta
3	chr13:40114400-40136000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr13:40115400-40133200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr13:40115600-40133600	Weak transcription	Osteobl	bone
6	chr13:40121400-40136200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr13:40123000-40131800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr13:40125400-40133400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr13:40125600-40133000	Weak transcription	Lung	lung
10	chr13:40126400-40137200	Weak transcription	NHLF	lung
11	chr13:40127000-40133400	Weak transcription	Brain Angular Gyrus	brain
12	chr13:40127000-40136200	Weak transcription	NHDF-Ad	bronchial
13	chr13:40128800-40137600	Weak transcription	Colon Smooth Muscle	Colon
14	chr13:40129000-40131800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr13:40129000-40133000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr13:40129000-40133200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr13:40129000-40145600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr13:40129000-40152800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr13:40129200-40133200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr13:40129200-40133200	Weak transcription	Brain Substantia Nigra	brain
21	chr13:40129200-40135800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr13:40129200-40135800	Weak transcription	HMEC	breast
23	chr13:40129400-40136800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr13:40129800-40133200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr13:40130000-40139600	Weak transcription	Fetal Stomach	stomach
26	chr13:40130400-40131800	Enhancers	HSMMtube	muscle
27	chr13:40130400-40133600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr13:40130600-40132200	Enhancers	Fetal Muscle Leg	muscle
29	chr13:40130800-40133200	Weak transcription	Fetal Heart	heart
30	chr13:40130800-40133200	Weak transcription	Right Atrium	heart
31	chr13:40131000-40132200	Enhancers	Fetal Muscle Trunk	muscle
32	chr13:40131000-40138600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr13:40131000-40138600	Weak transcription	Adipose Nuclei	Adipose
34	chr13:40131200-40132200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr13:40131200-40137600	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr13:40131400-40132000	Enhancers	HSMM	muscle
37	chr13:40131400-40132200	Genic enhancers	Left Ventricle	heart
38	chr13:40131400-40132200	Genic enhancers	Right Ventricle	heart
39	chr13:40131400-40132600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr13:40131600-40132400	Strong transcription	Fetal Lung	lung
41	chr13:40131600-40132600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr13:40131600-40135000	Weak transcription	Ovary	ovary
43	chr13:40131600-40135400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr13:40131600-40137400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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