Variant report

Variant	rs9576841
Chromosome Location	chr13:40111330-40111331
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs17060035	1.00[TSI][hapmap]
rs17060174	0.88[CHB][hapmap];1.00[ASN][1000 genomes]
rs73466901	0.98[ASN][1000 genomes]
rs7997300	1.00[TSI][hapmap]
rs9315699	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9566449	0.86[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9566450	0.96[ASN][1000 genomes]
rs9566453	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9566454	1.00[ASN][1000 genomes]
rs9576803	1.00[TSI][hapmap]
rs9576829	0.88[CHB][hapmap];1.00[GIH][hapmap]
rs9576830	1.00[JPT][hapmap]
rs9576831	0.98[ASN][1000 genomes]
rs9576832	0.96[ASN][1000 genomes]
rs9576833	0.88[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9576834	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9576835	1.00[ASN][1000 genomes]
rs9576836	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9576837	1.00[ASN][1000 genomes]
rs9576840	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9576842	0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9576843	0.88[CHB][hapmap];1.00[ASN][1000 genomes]
rs9576854	0.98[ASN][1000 genomes]
rs9741636	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1050137	chr13:40090742-40118499	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:40106000-40113200	Weak transcription	Fetal Lung	lung
2	chr13:40106200-40113200	Weak transcription	Colon Smooth Muscle	Colon
3	chr13:40106400-40111400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:40106400-40113400	Weak transcription	HSMM	muscle
5	chr13:40106400-40113600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr13:40106400-40116600	Weak transcription	Fetal Muscle Leg	muscle
7	chr13:40106600-40113400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr13:40106600-40117400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr13:40106800-40124000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr13:40107800-40140200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr13:40108400-40113200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr13:40109000-40112600	Enhancers	Placenta Amnion	Placenta Amnion
13	chr13:40109000-40113600	Weak transcription	Fetal Brain Female	brain
14	chr13:40109000-40114000	Enhancers	NHDF-Ad	bronchial
15	chr13:40109200-40112200	Enhancers	Fetal Heart	heart
16	chr13:40109600-40113000	Weak transcription	Osteobl	bone
17	chr13:40110200-40111600	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr13:40110400-40111400	Enhancers	Adipose Nuclei	Adipose
19	chr13:40110400-40111400	Enhancers	Left Ventricle	heart
20	chr13:40110400-40111400	Enhancers	Right Ventricle	heart
21	chr13:40110400-40111600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr13:40110400-40111600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr13:40110400-40111600	Enhancers	Psoas Muscle	Psoas
24	chr13:40110400-40111600	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr13:40110400-40111800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr13:40110400-40112000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr13:40110600-40111400	Enhancers	Brain Anterior Caudate	brain
28	chr13:40110600-40112000	Enhancers	NHEK	skin
29	chr13:40110800-40111400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr13:40110800-40111600	Enhancers	NHLF	lung
31	chr13:40110800-40111800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr13:40110800-40113200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr13:40110800-40113600	Weak transcription	Esophagus	oesophagus
34	chr13:40110800-40115200	Weak transcription	Right Atrium	heart
35	chr13:40111000-40111600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr13:40111200-40111400	Enhancers	Ovary	ovary
37	chr13:40111200-40111600	Enhancers	Brain Cingulate Gyrus	brain
38	chr13:40111200-40111600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr13:40111200-40111800	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr13:40111200-40113000	Enhancers	Fetal Brain Male	brain
41	chr13:40111200-40133200	Weak transcription	Aorta	Aorta

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