Variant report

Variant	rs73467513
Chromosome Location	chr9:85593463-85593464
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs58472540	1.00[AMR][1000 genomes]
rs60334602	1.00[AMR][1000 genomes]
rs61056645	1.00[AMR][1000 genomes]
rs6559692	1.00[AMR][1000 genomes]
rs7029474	1.00[AMR][1000 genomes]
rs73465591	1.00[AMR][1000 genomes]
rs73467522	1.00[AMR][1000 genomes]
rs73467526	1.00[AMR][1000 genomes]
rs73467529	1.00[AMR][1000 genomes]
rs73471419	1.00[AMR][1000 genomes]
rs73471424	1.00[AMR][1000 genomes]
rs73471435	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050771	chr9:85416931-85643417	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv6585	chr9:85566659-85611489	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85579800-85596200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:85590600-85593800	Weak transcription	Gastric	stomach
3	chr9:85591200-85602800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:85591600-85593800	Weak transcription	Pancreas	Pancrea
5	chr9:85592200-85599200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr9:85592400-85597000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr9:85592400-85602400	Weak transcription	Esophagus	oesophagus
8	chr9:85592600-85594000	Weak transcription	Fetal Intestine Large	intestine
9	chr9:85592600-85601800	Weak transcription	Fetal Intestine Small	intestine
10	chr9:85592800-85608600	Weak transcription	Stomach Mucosa	stomach
11	chr9:85593200-85593600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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