Variant report

Variant	rs73471435
Chromosome Location	chr9:85672243-85672244
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs58472540	1.00[AMR][1000 genomes]
rs60334602	1.00[AMR][1000 genomes]
rs61056645	1.00[AMR][1000 genomes]
rs6559692	1.00[AMR][1000 genomes]
rs7029474	1.00[AMR][1000 genomes]
rs73465591	1.00[AMR][1000 genomes]
rs73467513	1.00[AMR][1000 genomes]
rs73467522	1.00[AMR][1000 genomes]
rs73467526	1.00[AMR][1000 genomes]
rs73467529	1.00[AMR][1000 genomes]
rs73471419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73471424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893511	chr9:85495968-85833127	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1043722	chr9:85663674-85747562	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85663200-85676400	Weak transcription	Gastric	stomach
2	chr9:85663600-85673400	Weak transcription	Stomach Mucosa	stomach
3	chr9:85663800-85674200	Weak transcription	Pancreas	Pancrea
4	chr9:85670600-85672600	Enhancers	Fetal Intestine Large	intestine
5	chr9:85670800-85673200	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr9:85671200-85672400	Enhancers	A549	lung
7	chr9:85671600-85673000	Enhancers	Duodenum Mucosa	Duodenum
8	chr9:85671600-85673800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr9:85671800-85675200	Weak transcription	Fetal Intestine Small	intestine
10	chr9:85672000-85672600	Enhancers	Rectal Mucosa Donor 29	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links