Variant report

Variant	rs73471350
Chromosome Location	chr6:70039202-70039203
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11751775	0.83[EUR][1000 genomes]
rs11755891	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11758564	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12173971	0.84[EUR][1000 genomes]
rs12526777	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1321975	0.84[EUR][1000 genomes]
rs16900663	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16900676	0.84[EUR][1000 genomes]
rs17691995	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2031896	0.84[EUR][1000 genomes]
rs2296975	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2880923	0.92[EUR][1000 genomes]
rs3799093	0.92[EUR][1000 genomes]
rs3799094	0.92[EUR][1000 genomes]
rs58607458	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907374	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73471339	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9351751	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv886139	chr6:69979989-70041922	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv603634	chr6:70007450-70060225	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv463149	chr6:70007450-70097588	Weak transcription Strong transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv603635	chr6:70007450-70097588	Weak transcription Enhancers Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70033200-70053600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:70034600-70039400	Weak transcription	Brain Angular Gyrus	brain
3	chr6:70039200-70039800	Enhancers	Brain Anterior Caudate	brain
4	chr6:70039200-70040000	Enhancers	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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