Variant report

Variant	rs3799093
Chromosome Location	chr6:70074563-70074564
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11751775	0.81[EUR][1000 genomes]
rs11755891	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11758564	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11964197	1.00[CEU][hapmap]
rs12173971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12525747	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12526777	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16900663	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16900676	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17691995	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2296974	0.84[EUR][1000 genomes]
rs2296975	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes]
rs2880923	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3799094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58607458	0.98[EUR][1000 genomes]
rs6907374	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6912952	0.83[EUR][1000 genomes]
rs73471339	0.92[EUR][1000 genomes]
rs73471350	0.92[EUR][1000 genomes]
rs9346273	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9351751	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv463149	chr6:70007450-70097588	Weak transcription Strong transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv603635	chr6:70007450-70097588	Weak transcription Enhancers Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70049600-70080600	Weak transcription	Fetal Brain Male	brain
2	chr6:70054600-70098600	Weak transcription	Brain Anterior Caudate	brain
3	chr6:70054600-70100600	Weak transcription	Brain Angular Gyrus	brain
4	chr6:70054800-70080600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:70059200-70083200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:70060000-70078200	Weak transcription	Fetal Lung	lung
7	chr6:70063000-70080600	Weak transcription	Brain Germinal Matrix	brain
8	chr6:70066600-70080600	Weak transcription	Fetal Brain Female	brain
9	chr6:70071400-70078600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:70072600-70080600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr6:70073200-70074600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:70073400-70075200	Enhancers	Cortex derived primary cultured neurospheres	brain

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