Variant report

Variant	rs12525747
Chromosome Location	chr6:70102584-70102585
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11751520	1.00[ASW][hapmap]
rs11751775	1.00[GIH][hapmap]
rs11755891	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11758564	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11964197	1.00[CEU][hapmap]
rs12173971	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12526777	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16900663	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs16900676	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.92[TSI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17691995	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[MEX][hapmap]
rs1952435	0.87[CHD][hapmap]
rs2296974	1.00[GIH][hapmap]
rs2296975	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[MEX][hapmap]
rs2880923	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3799093	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3799094	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[MEX][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58607458	0.85[EUR][1000 genomes]
rs6907374	0.85[EUR][1000 genomes]
rs6912952	1.00[GIH][hapmap]
rs9346273	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9351751	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.92[TSI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70081000-70108000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:70097200-70109000	Weak transcription	Fetal Brain Male	brain
3	chr6:70099200-70106000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:70099200-70108000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:70099400-70108000	Weak transcription	Brain Anterior Caudate	brain
6	chr6:70100000-70103000	Weak transcription	Primary T cells from cord blood	blood

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