Variant report

Variant	rs73476316
Chromosome Location	chr9:86268138-86268139
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:86257425..86259233-chr9:86266050..86268167,2	MCF-7	breast:
2	chr9:86263153..86266168-chr9:86268070..86271813,4	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73476308	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1044639	chr9:86252505-86412041	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86239600-86272200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:86243200-86269600	Weak transcription	Pancreas	Pancrea
3	chr9:86244800-86278800	Weak transcription	Spleen	Spleen
4	chr9:86244800-86285800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:86245000-86268800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:86252800-86294000	Weak transcription	Small Intestine	intestine
7	chr9:86253000-86268600	Weak transcription	HepG2	liver
8	chr9:86257600-86271800	Weak transcription	Colonic Mucosa	Colon
9	chr9:86258600-86271800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr9:86258800-86272600	Weak transcription	Stomach Mucosa	stomach
11	chr9:86260600-86300400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr9:86260800-86281400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr9:86261000-86280200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:86262800-86272000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr9:86263400-86298800	Strong transcription	Fetal Thymus	thymus
16	chr9:86263600-86268800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr9:86264200-86268400	Strong transcription	Muscle Satellite Cultured Cells	--
18	chr9:86264400-86280200	Strong transcription	Fetal Muscle Leg	muscle
19	chr9:86264600-86268200	Strong transcription	Psoas Muscle	Psoas
20	chr9:86264600-86268200	Strong transcription	Skeletal Muscle Male	skeletal muscle
21	chr9:86264600-86268400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr9:86264600-86268600	Strong transcription	Skeletal Muscle Female	skeletal muscle
23	chr9:86264600-86268800	Strong transcription	Osteobl	bone
24	chr9:86264600-86280200	Strong transcription	Adipose Nuclei	Adipose
25	chr9:86264600-86280400	Strong transcription	Fetal Muscle Trunk	muscle
26	chr9:86264600-86280600	Strong transcription	Stomach Smooth Muscle	stomach
27	chr9:86264600-86281400	Strong transcription	HSMMtube	muscle
28	chr9:86264600-86284200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr9:86264600-86284400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr9:86264600-86297000	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr9:86264800-86268400	Strong transcription	HMEC	breast
32	chr9:86264800-86279400	Strong transcription	Primary T cells from cord blood	blood
33	chr9:86264800-86280200	Strong transcription	Primary B cells from peripheral blood	blood
34	chr9:86264800-86280200	Strong transcription	Duodenum Mucosa	Duodenum
35	chr9:86264800-86280200	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr9:86264800-86281800	Strong transcription	Duodenum Smooth Muscle	Duodenum
37	chr9:86264800-86294600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr9:86264800-86295600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr9:86264800-86298200	Strong transcription	Dnd41	blood
40	chr9:86264800-86300200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr9:86265000-86269000	Strong transcription	Fetal Kidney	kidney
42	chr9:86265000-86269000	Strong transcription	Ovary	ovary
43	chr9:86265000-86270400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr9:86265000-86274000	Strong transcription	Fetal Intestine Large	intestine
45	chr9:86265000-86280000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr9:86265000-86280800	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr9:86265000-86282000	Strong transcription	Placenta	Placenta
48	chr9:86265000-86284400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr9:86265000-86295200	Strong transcription	HSMM	muscle
50	chr9:86265000-86296800	Strong transcription	Liver	Liver

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