Variant report

Variant	rs73476308
Chromosome Location	chr9:86265142-86265143
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:86263153..86266168-chr9:86268070..86271813,4	K562	blood:
2	chr9:86248086..86250305-chr9:86262008..86265514,3	MCF-7	breast:
3	chr9:86264014..86266194-chr9:86272774..86275597,2	MCF-7	breast:
4	chr9:86254977..86260062-chr9:86262570..86265778,5	MCF-7	breast:
5	chr9:86256742..86260226-chr9:86261341..86265382,4	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs57018109	0.85[AFR][1000 genomes]
rs73474349	0.84[AFR][1000 genomes]
rs73474390	0.85[AFR][1000 genomes]
rs73474395	0.85[AFR][1000 genomes]
rs73474399	0.85[AFR][1000 genomes]
rs73476304	0.85[AFR][1000 genomes]
rs73476315	0.85[AFR][1000 genomes]
rs73476316	0.83[AFR][1000 genomes]
rs73476323	0.85[AFR][1000 genomes]
rs73476326	0.85[AFR][1000 genomes]
rs73476336	0.85[AFR][1000 genomes]
rs73476338	0.85[AFR][1000 genomes]
rs73476376	0.85[AFR][1000 genomes]
rs73478129	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1044639	chr9:86252505-86412041	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86239000-86265200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:86239400-86266200	Weak transcription	Colon Smooth Muscle	Colon
3	chr9:86239400-86266400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr9:86239600-86266600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr9:86239600-86272200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr9:86239800-86266800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr9:86243200-86269600	Weak transcription	Pancreas	Pancrea
8	chr9:86243600-86266200	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr9:86244800-86278800	Weak transcription	Spleen	Spleen
10	chr9:86244800-86285800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr9:86245000-86268800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:86245200-86266400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr9:86246000-86266400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr9:86248400-86266200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr9:86252000-86266800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr9:86252400-86265200	Weak transcription	NH-A	brain
17	chr9:86252800-86294000	Weak transcription	Small Intestine	intestine
18	chr9:86253000-86268600	Weak transcription	HepG2	liver
19	chr9:86255000-86266000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr9:86257000-86266800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr9:86257400-86265200	Weak transcription	Fetal Brain Male	brain
22	chr9:86257400-86266400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr9:86257600-86271800	Weak transcription	Colonic Mucosa	Colon
24	chr9:86258200-86266000	Weak transcription	Brain Germinal Matrix	brain
25	chr9:86258400-86266400	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr9:86258600-86271800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr9:86258800-86272600	Weak transcription	Stomach Mucosa	stomach
28	chr9:86259000-86265200	Weak transcription	Fetal Lung	lung
29	chr9:86259000-86266400	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr9:86259400-86265200	Weak transcription	Primary hematopoietic stem cells	blood
31	chr9:86259400-86267200	Weak transcription	Hela-S3	cervix
32	chr9:86260200-86266800	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr9:86260200-86267600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr9:86260600-86300400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr9:86260800-86281400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr9:86261000-86280200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr9:86261200-86266400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr9:86261400-86266000	Weak transcription	Right Ventricle	heart
39	chr9:86261600-86267400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr9:86262400-86265200	Weak transcription	Brain Angular Gyrus	brain
41	chr9:86262400-86266200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr9:86262400-86266400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr9:86262800-86265200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr9:86262800-86266000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr9:86262800-86266000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr9:86262800-86266000	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr9:86262800-86266400	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr9:86262800-86272000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr9:86263000-86266000	Weak transcription	NHDF-Ad	bronchial
50	chr9:86263200-86266400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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