Variant report

Variant	rs73476315
Chromosome Location	chr9:86267164-86267165
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:86265306..86267714-chr9:86322135..86323961,2	MCF-7	breast:
2	chr9:86257425..86259233-chr9:86266050..86268167,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135018	Chromatin interaction
ENSG00000254473	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs57018109	1.00[AFR][1000 genomes]
rs57378362	0.93[AFR][1000 genomes]
rs60567720	0.93[AFR][1000 genomes]
rs60608689	0.93[AFR][1000 genomes]
rs73474390	1.00[AFR][1000 genomes]
rs73474395	1.00[AFR][1000 genomes]
rs73474399	1.00[AFR][1000 genomes]
rs73476304	1.00[AFR][1000 genomes]
rs73476308	0.85[AFR][1000 genomes]
rs73476323	1.00[AFR][1000 genomes]
rs73476326	1.00[AFR][1000 genomes]
rs73476336	1.00[AFR][1000 genomes]
rs73476338	1.00[AFR][1000 genomes]
rs73476342	0.93[AFR][1000 genomes]
rs73476345	0.85[AFR][1000 genomes]
rs73476376	1.00[AFR][1000 genomes]
rs73478129	1.00[AFR][1000 genomes]
rs73478135	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1044639	chr9:86252505-86412041	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86239600-86272200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:86243200-86269600	Weak transcription	Pancreas	Pancrea
3	chr9:86244800-86278800	Weak transcription	Spleen	Spleen
4	chr9:86244800-86285800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:86245000-86268800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:86252800-86294000	Weak transcription	Small Intestine	intestine
7	chr9:86253000-86268600	Weak transcription	HepG2	liver
8	chr9:86257600-86271800	Weak transcription	Colonic Mucosa	Colon
9	chr9:86258600-86271800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr9:86258800-86272600	Weak transcription	Stomach Mucosa	stomach
11	chr9:86259400-86267200	Weak transcription	Hela-S3	cervix
12	chr9:86260200-86267600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr9:86260600-86300400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr9:86260800-86281400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr9:86261000-86280200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr9:86261600-86267400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr9:86262800-86272000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr9:86263400-86298800	Strong transcription	Fetal Thymus	thymus
19	chr9:86263600-86268800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr9:86264200-86268400	Strong transcription	Muscle Satellite Cultured Cells	--
21	chr9:86264400-86267600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr9:86264400-86280200	Strong transcription	Fetal Muscle Leg	muscle
23	chr9:86264600-86267600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr9:86264600-86267800	Strong transcription	NHLF	lung
25	chr9:86264600-86268000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr9:86264600-86268000	Strong transcription	Brain Anterior Caudate	brain
27	chr9:86264600-86268200	Strong transcription	Psoas Muscle	Psoas
28	chr9:86264600-86268200	Strong transcription	Skeletal Muscle Male	skeletal muscle
29	chr9:86264600-86268400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr9:86264600-86268600	Strong transcription	Skeletal Muscle Female	skeletal muscle
31	chr9:86264600-86268800	Strong transcription	Osteobl	bone
32	chr9:86264600-86280200	Strong transcription	Adipose Nuclei	Adipose
33	chr9:86264600-86280400	Strong transcription	Fetal Muscle Trunk	muscle
34	chr9:86264600-86280600	Strong transcription	Stomach Smooth Muscle	stomach
35	chr9:86264600-86281400	Strong transcription	HSMMtube	muscle
36	chr9:86264600-86284200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr9:86264600-86284400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr9:86264600-86297000	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr9:86264800-86267400	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr9:86264800-86268000	Strong transcription	Brain Inferior Temporal Lobe	brain
41	chr9:86264800-86268400	Strong transcription	HMEC	breast
42	chr9:86264800-86279400	Strong transcription	Primary T cells from cord blood	blood
43	chr9:86264800-86280200	Strong transcription	Primary B cells from peripheral blood	blood
44	chr9:86264800-86280200	Strong transcription	Duodenum Mucosa	Duodenum
45	chr9:86264800-86280200	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr9:86264800-86281800	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr9:86264800-86294600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr9:86264800-86295600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr9:86264800-86298200	Strong transcription	Dnd41	blood
50	chr9:86264800-86300200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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