Variant report

Variant	rs57018109
Chromosome Location	chr9:86245164-86245165
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:86244611..86247023-chr9:86320465..86322962,2	MCF-7	breast:
2	chr9:86244110..86246714-chr9:86535414..86538304,2	K562	blood:
3	chr9:86238599..86242233-chr9:86242446..86245459,4	K562	blood:
4	chr9:86243220..86245781-chr9:86323093..86324779,2	MCF-7	breast:
5	chr9:86230729..86232939-chr9:86244046..86245933,2	K562	blood:
6	chr9:86210303..86212582-chr9:86243491..86245294,2	MCF-7	breast:
7	chr9:86243566..86245560-chr9:86258572..86260267,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165115	Chromatin interaction
ENSG00000254473	Chromatin interaction
ENSG00000199483	Chromatin interaction
ENSG00000135018	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs57378362	0.93[AFR][1000 genomes]
rs60567720	0.93[AFR][1000 genomes]
rs60608689	0.93[AFR][1000 genomes]
rs73474390	1.00[AFR][1000 genomes]
rs73474395	1.00[AFR][1000 genomes]
rs73474399	1.00[AFR][1000 genomes]
rs73476304	1.00[AFR][1000 genomes]
rs73476308	0.85[AFR][1000 genomes]
rs73476315	1.00[AFR][1000 genomes]
rs73476323	1.00[AFR][1000 genomes]
rs73476326	1.00[AFR][1000 genomes]
rs73476336	1.00[AFR][1000 genomes]
rs73476338	1.00[AFR][1000 genomes]
rs73476342	0.93[AFR][1000 genomes]
rs73476345	0.85[AFR][1000 genomes]
rs73476376	1.00[AFR][1000 genomes]
rs73478129	1.00[AFR][1000 genomes]
rs73478135	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv516587	chr9:86226119-86255765	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv973848	chr9:86241130-86260149	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86238600-86265000	Weak transcription	Ovary	ovary
2	chr9:86238800-86246000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:86238800-86246000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:86238800-86254600	Weak transcription	Left Ventricle	heart
5	chr9:86238800-86260600	Weak transcription	Right Ventricle	heart
6	chr9:86238800-86264600	Weak transcription	Psoas Muscle	Psoas
7	chr9:86239000-86245200	Weak transcription	Fetal Kidney	kidney
8	chr9:86239000-86245400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr9:86239000-86250000	Weak transcription	HSMMtube	muscle
10	chr9:86239000-86264800	Weak transcription	HMEC	breast
11	chr9:86239000-86265200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr9:86239200-86245800	Weak transcription	Brain Germinal Matrix	brain
13	chr9:86239200-86261000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr9:86239400-86245400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr9:86239400-86245800	Weak transcription	Fetal Heart	heart
16	chr9:86239400-86245800	Weak transcription	Fetal Lung	lung
17	chr9:86239400-86248000	Weak transcription	NHDF-Ad	bronchial
18	chr9:86239400-86254400	Weak transcription	Brain Anterior Caudate	brain
19	chr9:86239400-86254400	Weak transcription	Brain Substantia Nigra	brain
20	chr9:86239400-86266200	Weak transcription	Colon Smooth Muscle	Colon
21	chr9:86239400-86266400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr9:86239600-86245600	Weak transcription	Brain Angular Gyrus	brain
23	chr9:86239600-86245600	Weak transcription	Fetal Brain Female	brain
24	chr9:86239600-86260800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr9:86239600-86260800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr9:86239600-86265000	Weak transcription	HUVEC	blood vessel
27	chr9:86239600-86266600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr9:86239600-86272200	Weak transcription	Rectal Smooth Muscle	rectum
29	chr9:86239800-86266800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr9:86240000-86246000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr9:86240200-86265000	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr9:86240400-86254600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr9:86240600-86245800	Weak transcription	K562	blood
34	chr9:86241400-86245200	Strong transcription	Fetal Muscle Trunk	muscle
35	chr9:86241600-86245200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr9:86242200-86256600	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr9:86242400-86246000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr9:86242400-86253800	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr9:86242400-86257000	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr9:86242400-86264800	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr9:86242600-86265000	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr9:86243200-86245600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr9:86243200-86260800	Weak transcription	Primary B cells from cord blood	blood
44	chr9:86243200-86261000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr9:86243200-86269600	Weak transcription	Pancreas	Pancrea
46	chr9:86243600-86246000	Strong transcription	Primary hematopoietic stem cells	blood
47	chr9:86243600-86264800	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr9:86243600-86266200	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr9:86243800-86245200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr9:86243800-86245200	Strong transcription	Osteobl	bone

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