Variant report

Variant	rs60608689
Chromosome Location	chr9:86231812-86231813
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs57018109	0.93[AFR][1000 genomes]
rs57378362	0.87[AFR][1000 genomes]
rs60567720	0.87[AFR][1000 genomes]
rs73474390	0.93[AFR][1000 genomes]
rs73474395	0.93[AFR][1000 genomes]
rs73474399	0.93[AFR][1000 genomes]
rs73476304	0.93[AFR][1000 genomes]
rs73476315	0.93[AFR][1000 genomes]
rs73476323	0.93[AFR][1000 genomes]
rs73476326	0.93[AFR][1000 genomes]
rs73476336	0.93[AFR][1000 genomes]
rs73476338	0.93[AFR][1000 genomes]
rs73476342	0.86[AFR][1000 genomes]
rs73476376	0.93[AFR][1000 genomes]
rs73478129	0.93[AFR][1000 genomes]
rs73478135	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv516587	chr9:86226119-86255765	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86216200-86237400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:86231600-86233000	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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