Variant report

Variant	rs73477477
Chromosome Location	chr7:117452281-117452282
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117450940..117453644-chr7:117454912..117457545,2	MCF-7	breast:
2	chr7:117445818..117448330-chr7:117452040..117454903,3	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs34018535	1.00[AMR][1000 genomes]
rs35637601	1.00[AMR][1000 genomes]
rs35746597	1.00[AMR][1000 genomes]
rs73477483	1.00[AMR][1000 genomes]
rs73477495	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479305	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117432200-117453000	Weak transcription	Aorta	Aorta
2	chr7:117437400-117456200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:117447600-117453400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr7:117448000-117453400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:117448400-117454200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr7:117448600-117458400	Weak transcription	Esophagus	oesophagus
7	chr7:117449000-117467200	Weak transcription	Fetal Brain Female	brain
8	chr7:117449600-117455800	Weak transcription	Adipose Nuclei	Adipose
9	chr7:117449600-117458400	Weak transcription	Brain Angular Gyrus	brain
10	chr7:117450200-117452400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:117450200-117458400	Weak transcription	Fetal Brain Male	brain
12	chr7:117450400-117453200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr7:117450400-117455800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr7:117451000-117452400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr7:117451000-117453200	Weak transcription	Pancreas	Pancrea
16	chr7:117451000-117455800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr7:117451000-117456400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr7:117451200-117453000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr7:117451200-117453000	Weak transcription	Brain Anterior Caudate	brain
20	chr7:117451200-117453600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr7:117451200-117455200	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr7:117451200-117456000	Weak transcription	NHLF	lung
23	chr7:117451200-117456200	Weak transcription	NH-A	brain
24	chr7:117451400-117454000	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr7:117451400-117455800	Weak transcription	Brain Hippocampus Middle	brain
26	chr7:117451400-117455800	Weak transcription	Brain Substantia Nigra	brain
27	chr7:117451400-117456000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr7:117451600-117455600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr7:117451600-117455800	Weak transcription	Fetal Heart	heart
30	chr7:117451600-117456400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr7:117451600-117459200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr7:117452000-117453600	Enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links