Variant report

Variant	rs73477495
Chromosome Location	chr7:117469262-117469263
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:117461715..117464678-chr7:117467461..117469481,2	K562	blood:
2	chr7:117469182..117471688-chr7:117706530..117708485,2	MCF-7	breast:
3	chr7:117461715..117464678-chr7:117467461..117470565,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs34018535	1.00[AMR][1000 genomes]
rs35637601	1.00[AMR][1000 genomes]
rs35746597	1.00[AMR][1000 genomes]
rs61605094	1.00[AMR][1000 genomes]
rs73477477	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73477483	1.00[AMR][1000 genomes]
rs73479305	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117456600-117478200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:117460000-117474800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr7:117463800-117469400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr7:117464200-117469400	Weak transcription	Brain Germinal Matrix	brain
5	chr7:117464400-117470400	Enhancers	Brain Cingulate Gyrus	brain
6	chr7:117464600-117469600	Enhancers	Brain Hippocampus Middle	brain
7	chr7:117464600-117470200	Enhancers	Brain Anterior Caudate	brain
8	chr7:117464600-117470200	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr7:117464600-117471800	Enhancers	Brain Substantia Nigra	brain
10	chr7:117465600-117473200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr7:117467000-117469400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:117467000-117469800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr7:117467200-117469600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr7:117467200-117469800	Enhancers	Fetal Heart	heart
15	chr7:117467200-117470400	Enhancers	Brain Angular Gyrus	brain
16	chr7:117467200-117471400	Enhancers	NHLF	lung
17	chr7:117467200-117473200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr7:117467400-117469400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr7:117467400-117470400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr7:117467400-117471600	Enhancers	Fetal Lung	lung
21	chr7:117467600-117469400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr7:117467600-117469600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr7:117467600-117469600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr7:117467600-117470000	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr7:117467800-117469600	Enhancers	NHDF-Ad	bronchial
26	chr7:117467800-117470000	Enhancers	NH-A	brain
27	chr7:117467800-117471400	Enhancers	Colon Smooth Muscle	Colon
28	chr7:117468000-117469400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr7:117468000-117469400	Enhancers	Small Intestine	intestine
30	chr7:117468000-117469600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr7:117468200-117469400	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr7:117468200-117469800	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr7:117468200-117470800	Enhancers	Fetal Brain Male	brain
34	chr7:117468400-117469600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr7:117468400-117469800	Enhancers	Fetal Stomach	stomach
36	chr7:117468400-117474600	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr7:117468400-117474800	Weak transcription	Fetal Intestine Small	intestine
38	chr7:117468400-117475000	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr7:117468400-117475000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr7:117468600-117470000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr7:117468600-117471200	Weak transcription	Stomach Mucosa	stomach
42	chr7:117468600-117471600	Weak transcription	Gastric	stomach
43	chr7:117468600-117474600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr7:117468800-117469600	Weak transcription	Fetal Brain Female	brain
45	chr7:117468800-117469800	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr7:117469000-117469600	Enhancers	H1 Cell Line	embryonic stem cell
47	chr7:117469000-117469800	Enhancers	Left Ventricle	heart
48	chr7:117469000-117469800	Enhancers	Right Atrium	heart
49	chr7:117469000-117470200	Enhancers	Stomach Smooth Muscle	stomach
50	chr7:117469000-117470400	Weak transcription	Rectal Smooth Muscle	rectum

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