Variant report

Variant	rs73480109
Chromosome Location	chr9:73658730-73658731
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs7025112	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73480105	0.83[AMR][1000 genomes]
rs73480123	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042806	chr9:73613885-73686104	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73643800-73684000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:73651800-73663200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:73657200-73658800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr9:73658200-73663200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr9:73658200-73663400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr9:73658400-73660200	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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