Variant report

Variant	rs73480512
Chromosome Location	chr6:82477823-82477824
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:82474728..82479449-chr6:82479643..82485217,7	MCF-7	breast:
2	chr6:82476333..82478960-chr6:82529549..82531643,2	MCF-7	breast:
3	chr6:82475840..82480204-chr6:82524356..82527900,4	MCF-7	breast:
4	chr6:82477711..82479254-chr6:82489074..82491112,2	MCF-7	breast:
5	chr6:82460615..82464438-chr6:82472382..82478506,11	MCF-7	breast:
6	chr6:82476634..82480378-chr6:82495260..82498447,4	MCF-7	breast:
7	chr6:82474515..82478968-chr6:82494879..82497853,4	MCF-7	breast:
8	chr6:82477019..82479590-chr6:82506679..82508505,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000112773	Chromatin interaction

rs_ID	r²[population]
rs73480533	1.00[AMR][1000 genomes]
rs73480536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73480546	1.00[AMR][1000 genomes]
rs9449366	0.81[ASN][1000 genomes]
rs9449367	0.81[ASN][1000 genomes]
rs9449368	0.81[ASN][1000 genomes]

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82473800-82480600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr6:82474200-82485800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:82475600-82481200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:82475800-82478200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr6:82476000-82478400	Enhancers	HSMMtube	muscle
6	chr6:82476800-82478400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr6:82477000-82478600	Enhancers	Primary hematopoietic stem cells	blood
8	chr6:82477000-82479000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr6:82477000-82480400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:82477200-82478200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:82477200-82478400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:82477200-82478400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr6:82477200-82479000	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr6:82477200-82479200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:82477200-82479600	Enhancers	HepG2	liver
16	chr6:82477200-82480400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:82477200-82480400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:82477400-82478400	Weak transcription	Fetal Intestine Small	intestine
19	chr6:82477400-82479200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:82477400-82483600	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr6:82477600-82478000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:82477600-82478400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:82477600-82478800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:82477600-82479200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr6:82477600-82479400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr6:82477600-82479400	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr6:82477600-82479400	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr6:82477600-82479400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr6:82477600-82479400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr6:82477600-82479400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr6:82477600-82479400	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr6:82477600-82479400	Weak transcription	NHEK	skin
33	chr6:82477600-82479600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr6:82477600-82479600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr6:82477600-82479600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr6:82477600-82480400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr6:82477600-82480400	Enhancers	NHDF-Ad	bronchial
38	chr6:82477600-82480400	Enhancers	Osteobl	bone
39	chr6:82477600-82481600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr6:82477600-82482800	Weak transcription	Stomach Mucosa	stomach
41	chr6:82477600-82483200	Enhancers	Hela-S3	cervix
42	chr6:82477600-82485400	Weak transcription	Placenta	Placenta
43	chr6:82477800-82479200	Weak transcription	HMEC	breast
44	chr6:82477800-82479600	Enhancers	Pancreatic Islets	Pancreatic Islet
45	chr6:82477800-82480200	Weak transcription	Placenta Amnion	Placenta Amnion

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