Variant report

Variant	rs9449367
Chromosome Location	chr6:82516968-82516969
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16893522	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17662598	0.83[AMR][1000 genomes]
rs17730252	0.83[AMR][1000 genomes]
rs1931620	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6934507	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73480512	0.81[ASN][1000 genomes]
rs73480536	0.92[ASN][1000 genomes]
rs73482710	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73482712	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9449366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9449368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9449370	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9449373	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82513000-82517800	Weak transcription	Ovary	ovary
2	chr6:82516200-82517400	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr6:82516600-82517000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr6:82516600-82517000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:82516600-82517000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:82516600-82517000	Enhancers	HMEC	breast
7	chr6:82516600-82517200	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr6:82516600-82517200	Enhancers	Stomach Mucosa	stomach
9	chr6:82516600-82517600	Enhancers	HepG2	liver
10	chr6:82516600-82518400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:82516600-82519200	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr6:82516800-82517200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:82516800-82517200	Enhancers	Colonic Mucosa	Colon
14	chr6:82516800-82517200	Enhancers	Esophagus	oesophagus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links