Variant report

Variant	rs1931620
Chromosome Location	chr6:82540233-82540234
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10080537	0.86[ASN][1000 genomes]
rs16893522	0.97[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17662598	0.85[AMR][1000 genomes]
rs17730252	0.85[AMR][1000 genomes]
rs6911963	0.80[ASN][1000 genomes]
rs6934507	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73482710	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73482712	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9361863	0.80[ASN][1000 genomes]
rs9449366	0.97[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9449367	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9449368	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9449370	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9449373	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9449374	0.80[ASN][1000 genomes]
rs9449375	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82529400-82544000	Weak transcription	Right Atrium	heart
2	chr6:82537600-82541400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:82537600-82543400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr6:82540200-82541800	Enhancers	Liver	Liver
5	chr6:82540200-82544400	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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