Variant report

Variant	rs10080537
Chromosome Location	chr6:82555684-82555685
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1931620	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs28633156	0.81[ASN][1000 genomes]
rs6911963	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6934507	0.83[ASN][1000 genomes]
rs73482710	0.83[ASN][1000 genomes]
rs73482712	0.83[ASN][1000 genomes]
rs9361863	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9449367	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs9449368	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs9449370	0.83[ASN][1000 genomes]
rs9449373	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9449374	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9449375	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82549800-82556400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:82553200-82555800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:82553400-82559000	Weak transcription	Left Ventricle	heart
4	chr6:82553600-82556800	Weak transcription	HepG2	liver
5	chr6:82553600-82557000	Weak transcription	Stomach Mucosa	stomach
6	chr6:82553800-82556200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:82554400-82556200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:82554600-82556000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr6:82554800-82556000	Enhancers	Ovary	ovary
10	chr6:82555000-82555800	Enhancers	Primary hematopoietic stem cells	blood
11	chr6:82555400-82556000	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr6:82555600-82567400	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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