Variant report

Variant	rs16893522
Chromosome Location	chr6:82503792-82503793
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17662598	0.83[AMR][1000 genomes]
rs17730252	0.83[AMR][1000 genomes]
rs1931620	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6934507	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs73480536	0.89[ASN][1000 genomes]
rs73482710	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs73482712	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9449366	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9449367	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9449368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9449370	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9449373	0.84[CEU][hapmap];1.00[CHB][hapmap];0.81[GIH][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82500800-82507400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr6:82502200-82504800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:82502200-82506600	Weak transcription	HUVEC	blood vessel
4	chr6:82503000-82503800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:82503000-82506800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:82503200-82503800	Enhancers	Adipose Nuclei	Adipose
7	chr6:82503200-82504000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:82503200-82504400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr6:82503200-82507200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:82503600-82504400	Enhancers	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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