Variant report

Variant	rs17662598
Chromosome Location	chr6:82552534-82552535
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16893522	0.83[AMR][1000 genomes]
rs17730252	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1931620	0.85[AMR][1000 genomes]
rs6934507	0.83[AMR][1000 genomes]
rs73482710	0.83[AMR][1000 genomes]
rs73482712	0.83[AMR][1000 genomes]
rs9449366	0.83[AMR][1000 genomes]
rs9449367	0.89[CEU][hapmap];0.83[AMR][1000 genomes]
rs9449368	0.89[CEU][hapmap];0.83[AMR][1000 genomes]
rs9449370	0.83[AMR][1000 genomes]
rs9449373	0.89[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82548000-82554800	Weak transcription	Aorta	Aorta
2	chr6:82548800-82553800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:82549800-82556400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:82551400-82553600	Enhancers	Stomach Mucosa	stomach
5	chr6:82551600-82552600	Enhancers	Liver	Liver
6	chr6:82551600-82553600	Enhancers	HepG2	liver
7	chr6:82552000-82552800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:82552000-82553400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:82552200-82553200	Weak transcription	Ovary	ovary
10	chr6:82552200-82555600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:82552400-82553200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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