Variant report

Variant	rs73482977
Chromosome Location	chr9:92746260-92746261
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10821308	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10821358	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821381	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10993051	0.84[ASN][1000 genomes]
rs10993105	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10993510	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10993701	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10993703	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92745000-92752800	Weak transcription	Liver	Liver
2	chr9:92745000-92755400	Weak transcription	Psoas Muscle	Psoas
3	chr9:92745400-92747600	Enhancers	NHEK	skin
4	chr9:92745400-92747800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:92745400-92748600	Enhancers	HMEC	breast
6	chr9:92745800-92747800	Enhancers	Osteobl	bone
7	chr9:92746000-92746400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:92746000-92746600	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr9:92746000-92746600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr9:92746000-92747800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:92746000-92747800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr9:92746000-92747800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:92746000-92747800	Enhancers	HSMM	muscle
14	chr9:92746000-92747800	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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