Variant report

Variant	rs73485410
Chromosome Location	chr6:86349432-86349433
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:86321877..86325209-chr6:86349274..86351856,3	K562	blood:
2	chr6:86338689..86357756-chr6:86378394..86390434,115	MCF-7	breast:
3	chr6:86326511..86329111-chr6:86347081..86350058,3	K562	blood:
4	chr6:86300873..86305245-chr6:86347697..86356641,19	K562	blood:
5	chr6:86300457..86307827-chr6:86347697..86356337,20	K562	blood:
6	chr6:86317763..86319413-chr6:86348369..86350869,2	K562	blood:
7	chr6:86327554..86329111-chr6:86347081..86350058,2	K562	blood:
8	chr6:86308147..86310058-chr6:86348388..86350658,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000203875	Chromatin interaction
ENSG00000135317	Chromatin interaction
ENSG00000271793	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs59846877	1.00[AFR][1000 genomes]
rs73481353	0.93[AFR][1000 genomes]
rs73481358	0.93[AFR][1000 genomes]
rs73481382	0.96[AFR][1000 genomes]
rs73481393	0.96[AFR][1000 genomes]
rs73483570	0.80[AFR][1000 genomes]
rs73485412	0.96[AFR][1000 genomes]
rs73485413	0.96[AFR][1000 genomes]
rs73485419	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022445	chr6:85972678-86392968	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv538349	chr6:85972678-86392968	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv886334	chr6:86214507-86394403	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:86316400-86350600	Strong transcription	Fetal Thymus	thymus
2	chr6:86317600-86349800	Strong transcription	Rectal Mucosa Donor 31	rectum
3	chr6:86319000-86350000	Strong transcription	Fetal Muscle Trunk	muscle
4	chr6:86319600-86350000	Strong transcription	Rectal Mucosa Donor 29	rectum
5	chr6:86320200-86350400	Strong transcription	H1 Cell Line	embryonic stem cell
6	chr6:86321000-86349600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:86323600-86351200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:86328000-86349800	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr6:86335200-86349600	Strong transcription	Fetal Muscle Leg	muscle
10	chr6:86340400-86350400	Weak transcription	Aorta	Aorta
11	chr6:86346200-86349800	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr6:86346200-86350400	Weak transcription	Fetal Intestine Small	intestine
13	chr6:86346400-86350600	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:86346600-86350000	Genic enhancers	HepG2	liver
15	chr6:86346600-86352400	Transcr. at gene 5' and 3'	Dnd41	blood
16	chr6:86347000-86349800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr6:86347000-86349800	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr6:86347000-86350200	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:86347000-86350200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr6:86347000-86350200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:86347000-86350400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
22	chr6:86347000-86350400	Genic enhancers	Colon Smooth Muscle	Colon
23	chr6:86347000-86351200	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
24	chr6:86347400-86349600	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr6:86347400-86349600	Genic enhancers	Rectal Smooth Muscle	rectum
26	chr6:86347400-86350800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr6:86347600-86349800	Genic enhancers	Muscle Satellite Cultured Cells	--
28	chr6:86347800-86350200	Genic enhancers	Duodenum Mucosa	Duodenum
29	chr6:86347800-86350400	Genic enhancers	Skeletal Muscle Female	skeletal muscle
30	chr6:86348200-86349600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr6:86348200-86349800	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr6:86348200-86350000	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:86348200-86350200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:86348200-86350400	Genic enhancers	Duodenum Smooth Muscle	Duodenum
35	chr6:86348200-86350600	Genic enhancers	Fetal Lung	lung
36	chr6:86348200-86351600	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr6:86348400-86349600	Genic enhancers	Brain Germinal Matrix	brain
38	chr6:86348400-86349800	Transcr. at gene 5' and 3'	Breast Myoepithelial Primary Cells	Breast
39	chr6:86348400-86350000	Genic enhancers	Primary T cells from cord blood	blood
40	chr6:86348400-86350200	Genic enhancers	NHDF-Ad	bronchial
41	chr6:86348400-86350400	Genic enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr6:86348400-86351000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
43	chr6:86348400-86351600	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr6:86348400-86351800	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
45	chr6:86348600-86349600	Genic enhancers	Brain Anterior Caudate	brain
46	chr6:86348600-86349600	Strong transcription	Colonic Mucosa	Colon
47	chr6:86348600-86349600	Genic enhancers	Fetal Brain Male	brain
48	chr6:86348600-86349600	Genic enhancers	Left Ventricle	heart
49	chr6:86348600-86349600	Genic enhancers	Small Intestine	intestine
50	chr6:86348600-86349800	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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