Variant report

Variant	rs73485412
Chromosome Location	chr6:86351214-86351215
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:46413152..46415353-chr6:86350444..86353443,6	MCF-7	breast:
2	chr6:86321877..86325209-chr6:86349274..86351856,3	K562	blood:
3	chr6:86338689..86357756-chr6:86378394..86390434,115	MCF-7	breast:
4	chr6:86320215..86324957-chr6:86350476..86355138,8	MCF-7	breast:
5	chr6:86299824..86305374-chr6:86350530..86356322,11	MCF-7	breast:
6	chr6:86300873..86305245-chr6:86347697..86356641,19	K562	blood:
7	chr6:86300457..86307827-chr6:86347697..86356337,20	K562	blood:
8	chr6:86301331..86304881-chr6:86350851..86355985,12	MCF-7	breast:
9	chr6:86350291..86355305-chr6:86366070..86378212,20	MCF-7	breast:
10	chr6:86322096..86325209-chr6:86349720..86353694,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000135317	Chromatin interaction
ENSG00000203875	Chromatin interaction
ENSG00000196562	Chromatin interaction
ENSG00000220563	Chromatin interaction
ENSG00000271793	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs59846877	0.96[AFR][1000 genomes]
rs73481353	0.96[AFR][1000 genomes]
rs73481358	0.96[AFR][1000 genomes]
rs73481370	0.81[AFR][1000 genomes]
rs73481382	1.00[AFR][1000 genomes]
rs73481393	1.00[AFR][1000 genomes]
rs73483570	0.83[AFR][1000 genomes]
rs73485410	0.96[AFR][1000 genomes]
rs73485413	1.00[AFR][1000 genomes]
rs73485419	0.92[AFR][1000 genomes]
rs73485448	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022445	chr6:85972678-86392968	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv538349	chr6:85972678-86392968	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv886334	chr6:86214507-86394403	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:86346600-86352400	Transcr. at gene 5' and 3'	Dnd41	blood
2	chr6:86348200-86351600	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:86348400-86351600	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:86348400-86351800	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
5	chr6:86349000-86351600	Transcr. at gene 5' and 3'	K562	blood
6	chr6:86349000-86354600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:86349200-86351600	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
8	chr6:86349200-86353000	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
9	chr6:86349400-86351400	Transcr. at gene 5' and 3'	iPS-18 Cell Line	embryonic stem cell
10	chr6:86349400-86351400	Weak transcription	Spleen	Spleen
11	chr6:86349800-86354200	Active TSS	NHLF	lung
12	chr6:86350000-86351400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:86350000-86351600	Flanking Active TSS	Primary T cells from cord blood	blood
14	chr6:86350200-86351400	Transcr. at gene 5' and 3'	NHEK	skin
15	chr6:86350200-86352600	Flanking Active TSS	Primary B cells from cord blood	blood
16	chr6:86350200-86353000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:86350400-86351400	Flanking Active TSS	Brain Hippocampus Middle	brain
18	chr6:86350400-86351400	Flanking Active TSS	Brain Substantia Nigra	brain
19	chr6:86350400-86351400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
20	chr6:86350400-86351600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
21	chr6:86350400-86351600	Flanking Active TSS	Adipose Nuclei	Adipose
22	chr6:86350400-86352400	Active TSS	Right Atrium	heart
23	chr6:86350400-86354200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:86350400-86354200	Active TSS	Fetal Intestine Small	intestine
25	chr6:86350400-86354400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr6:86350400-86354400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr6:86350400-86354400	Active TSS	Fetal Intestine Large	intestine
28	chr6:86350400-86354600	Active TSS	Aorta	Aorta
29	chr6:86350400-86354600	Active TSS	Ovary	ovary
30	chr6:86350400-86354600	Active TSS	Right Ventricle	heart
31	chr6:86350400-86354800	Active TSS	Fetal Muscle Leg	muscle
32	chr6:86350400-86355200	Active TSS	H9 Cell Line	embryonic stem cell
33	chr6:86350400-86355200	Active TSS	Psoas Muscle	Psoas
34	chr6:86350600-86351400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
35	chr6:86350600-86351400	Flanking Active TSS	Brain Anterior Caudate	brain
36	chr6:86350600-86351400	Flanking Active TSS	Fetal Heart	heart
37	chr6:86350600-86351400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
38	chr6:86350600-86351600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr6:86350600-86351600	Flanking Active TSS	Liver	Liver
40	chr6:86350600-86351600	Flanking Active TSS	Brain Angular Gyrus	brain
41	chr6:86350600-86351800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
42	chr6:86350600-86351800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:86350600-86352600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
44	chr6:86350600-86354200	Active TSS	Fetal Kidney	kidney
45	chr6:86350600-86354400	Active TSS	Breast Myoepithelial Primary Cells	Breast
46	chr6:86350600-86355000	Active TSS	HSMMtube	muscle
47	chr6:86350600-86355200	Active TSS	Stomach Smooth Muscle	stomach
48	chr6:86350600-86355600	Active TSS	ES-I3 Cell Line	embryonic stem cell
49	chr6:86350800-86351400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
50	chr6:86350800-86351400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links