Variant report

Variant	rs73485814
Chromosome Location	chr13:51675751-51675752
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs58524744	1.00[AMR][1000 genomes]
rs58852713	1.00[AMR][1000 genomes]
rs73483736	1.00[AMR][1000 genomes]
rs73483792	1.00[AMR][1000 genomes]
rs73483797	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73483802	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73492207	1.00[AMR][1000 genomes]
rs73492208	1.00[AMR][1000 genomes]
rs73497601	1.00[AMR][1000 genomes]
rs73501621	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51658400-51676600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:51672200-51675800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:51672400-51675800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr13:51672600-51675800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr13:51672600-51687200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr13:51672800-51675800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr13:51672800-51675800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr13:51672800-51676000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr13:51672800-51684600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr13:51672800-51692400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr13:51673000-51676200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr13:51675400-51676200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr13:51675400-51677200	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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