Variant report

Variant	rs73485869
Chromosome Location	chr11:63185700-63185701
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs60333825	1.00[AMR][1000 genomes]
rs60760957	1.00[AMR][1000 genomes]
rs61132425	1.00[AMR][1000 genomes]
rs7106014	1.00[AMR][1000 genomes]
rs7116264	1.00[AFR][1000 genomes]
rs73485825	0.91[AFR][1000 genomes]
rs73485827	0.91[AFR][1000 genomes]
rs73485838	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73485839	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73485855	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73485864	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488013	1.00[AMR][1000 genomes]
rs7929031	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv555178	chr11:63078742-63197930	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1822068	chr11:63146055-63239984	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv3434037	chr11:63170556-63217699	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63182000-63185800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr11:63184600-63187000	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr11:63185000-63186800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr11:63185200-63186800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr11:63185200-63187000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:63185200-63187000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr11:63185400-63186000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr11:63185400-63186600	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr11:63185400-63186600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr11:63185600-63186000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
11	chr11:63185600-63186400	Enhancers	Primary T killer memory cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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