Variant report

Variant	rs73485825
Chromosome Location	chr11:63171466-63171467
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:63168551..63171520-chr3:13164041..13166803,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1152240	1.00[AMR][1000 genomes]
rs1152247	1.00[AMR][1000 genomes]
rs11821164	1.00[AMR][1000 genomes]
rs11824742	1.00[AMR][1000 genomes]
rs11828961	1.00[AMR][1000 genomes]
rs1193719	1.00[AMR][1000 genomes]
rs1193720	1.00[AMR][1000 genomes]
rs1193728	1.00[AMR][1000 genomes]
rs1193853	1.00[AMR][1000 genomes]
rs1193854	1.00[AMR][1000 genomes]
rs1193855	1.00[AMR][1000 genomes]
rs1193863	1.00[AMR][1000 genomes]
rs1193864	1.00[AMR][1000 genomes]
rs1193867	1.00[AMR][1000 genomes]
rs1193872	1.00[AMR][1000 genomes]
rs1193901	1.00[AMR][1000 genomes]
rs1193903	1.00[AMR][1000 genomes]
rs1193906	1.00[AMR][1000 genomes]
rs1193910	1.00[AMR][1000 genomes]
rs1404609	1.00[AMR][1000 genomes]
rs2514265	1.00[AMR][1000 genomes]
rs2642528	1.00[AMR][1000 genomes]
rs3019069	1.00[AMR][1000 genomes]
rs60039724	1.00[AMR][1000 genomes]
rs60661472	1.00[AMR][1000 genomes]
rs61335619	1.00[AMR][1000 genomes]
rs7116264	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7118013	1.00[AMR][1000 genomes]
rs73483733	1.00[AMR][1000 genomes]
rs73483770	1.00[AMR][1000 genomes]
rs73483775	1.00[AMR][1000 genomes]
rs73483785	1.00[AMR][1000 genomes]
rs73485827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73485838	0.91[AFR][1000 genomes]
rs73485839	0.91[AFR][1000 genomes]
rs73485855	0.91[AFR][1000 genomes]
rs73485864	0.91[AFR][1000 genomes]
rs73485869	0.91[AFR][1000 genomes]
rs73485888	1.00[AMR][1000 genomes]
rs73488052	1.00[AMR][1000 genomes]
rs73488054	1.00[AMR][1000 genomes]
rs7929031	0.81[AFR][1000 genomes]
rs7935128	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv1053585	chr11:63057767-63180308	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv555178	chr11:63078742-63197930	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1822068	chr11:63146055-63239984	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1053627	chr11:63160057-63183395	Flanking Active TSS Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3434037	chr11:63170556-63217699	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63170600-63172800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr11:63170600-63173800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:63171400-63171800	Enhancers	Liver	Liver
4	chr11:63171400-63173200	Enhancers	HepG2	liver

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