Variant report

Variant	rs7935128
Chromosome Location	chr11:63279169-63279170
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:63276660..63278336-chr11:63278358..63280875,2	K562	blood:
2	chr11:63275444..63278336-chr11:63278957..63280875,2	K562	blood:
3	chr11:63277133..63281161-chr11:63281747..63286157,8	K562	blood:
4	chr11:63275953..63279929-chr11:63280930..63284463,8	K562	blood:

Variant related genes	Relation type
ENSG00000133317	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11820135	1.00[EUR][1000 genomes]
rs11821164	1.00[AMR][1000 genomes]
rs11828961	1.00[AMR][1000 genomes]
rs2642528	1.00[AMR][1000 genomes]
rs475053	1.00[EUR][1000 genomes]
rs501594	1.00[EUR][1000 genomes]
rs507893	1.00[EUR][1000 genomes]
rs55813757	1.00[EUR][1000 genomes]
rs56867396	1.00[EUR][1000 genomes]
rs57247740	1.00[EUR][1000 genomes]
rs57518967	1.00[EUR][1000 genomes]
rs577327	1.00[EUR][1000 genomes]
rs592416	1.00[TSI][hapmap]
rs597483	1.00[EUR][1000 genomes]
rs60039724	1.00[AMR][1000 genomes]
rs60168208	1.00[EUR][1000 genomes]
rs60590185	1.00[EUR][1000 genomes]
rs60661472	1.00[AMR][1000 genomes]
rs61335619	1.00[AMR][1000 genomes]
rs615155	1.00[TSI][hapmap]
rs61997169	1.00[EUR][1000 genomes]
rs652233	1.00[TSI][hapmap]
rs655995	1.00[EUR][1000 genomes]
rs7103797	1.00[EUR][1000 genomes]
rs7109362	1.00[TSI][hapmap]
rs7116264	1.00[AMR][1000 genomes]
rs7118013	1.00[AMR][1000 genomes]
rs7123161	1.00[EUR][1000 genomes]
rs7128461	1.00[EUR][1000 genomes]
rs73483770	1.00[AMR][1000 genomes]
rs73483775	1.00[AMR][1000 genomes]
rs73483785	1.00[AMR][1000 genomes]
rs73485825	1.00[AMR][1000 genomes]
rs73485827	1.00[AMR][1000 genomes]
rs73485888	1.00[AMR][1000 genomes]
rs73488052	1.00[AMR][1000 genomes]
rs73488054	1.00[AMR][1000 genomes]
rs7939687	1.00[EUR][1000 genomes]
rs7942307	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468588	chr11:63233363-63320239	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv555179	chr11:63233363-63320239	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63272000-63279600	Enhancers	Brain Hippocampus Middle	brain
2	chr11:63272600-63281200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:63274400-63279400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr11:63274400-63279600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:63275200-63286600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr11:63275600-63296400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:63275800-63279800	Enhancers	Brain Cingulate Gyrus	brain
8	chr11:63276200-63284200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:63276600-63282000	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr11:63276600-63289400	Weak transcription	Spleen	Spleen
11	chr11:63276800-63279600	Enhancers	Fetal Muscle Leg	muscle
12	chr11:63276800-63279800	Enhancers	Brain Substantia Nigra	brain
13	chr11:63276800-63281400	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr11:63276800-63289000	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr11:63277000-63279200	Enhancers	Liver	Liver
16	chr11:63277000-63279600	Enhancers	Brain Anterior Caudate	brain
17	chr11:63277200-63279200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:63277200-63279200	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr11:63277200-63279200	Enhancers	HSMMtube	muscle
20	chr11:63277200-63279400	Enhancers	Brain Angular Gyrus	brain
21	chr11:63277200-63279800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:63277200-63280000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr11:63277400-63279400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr11:63277400-63280000	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr11:63277600-63279200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:63277600-63279200	Enhancers	HSMM	muscle
27	chr11:63277600-63279400	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr11:63277600-63279400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:63277800-63279200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:63277800-63279200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr11:63277800-63279200	Enhancers	Muscle Satellite Cultured Cells	--
32	chr11:63277800-63279400	Enhancers	Primary hematopoietic stem cells	blood
33	chr11:63277800-63279400	Enhancers	Hela-S3	cervix
34	chr11:63278000-63279200	Enhancers	H1 Cell Line	embryonic stem cell
35	chr11:63278000-63279600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr11:63278000-63279800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr11:63278200-63279600	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr11:63278400-63279400	Weak transcription	Right Ventricle	heart
39	chr11:63278400-63280000	Genic enhancers	Adipose Nuclei	Adipose
40	chr11:63278600-63279400	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr11:63278600-63279400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
42	chr11:63278600-63280800	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr11:63278800-63280400	Weak transcription	Psoas Muscle	Psoas
44	chr11:63279000-63284600	Weak transcription	Ovary	ovary

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