Variant report
| Variant | rs60168208 |
|---|---|
| Chromosome Location | chr11:63168601-63168602 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:63168551..63171520-chr3:13164041..13166803,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11231450 | 0.92[AFR][1000 genomes] |
| rs11820135 | 1.00[EUR][1000 genomes] |
| rs475053 | 1.00[EUR][1000 genomes] |
| rs501594 | 1.00[EUR][1000 genomes] |
| rs507893 | 1.00[EUR][1000 genomes] |
| rs55813757 | 1.00[EUR][1000 genomes] |
| rs56867396 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57247740 | 1.00[EUR][1000 genomes] |
| rs57518967 | 1.00[EUR][1000 genomes] |
| rs577327 | 1.00[EUR][1000 genomes] |
| rs597483 | 1.00[EUR][1000 genomes] |
| rs60590185 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60645099 | 1.00[EUR][1000 genomes] |
| rs61997169 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs655995 | 1.00[EUR][1000 genomes] |
| rs7103797 | 1.00[EUR][1000 genomes] |
| rs7123161 | 1.00[EUR][1000 genomes] |
| rs7128461 | 1.00[EUR][1000 genomes] |
| rs7935128 | 1.00[EUR][1000 genomes] |
| rs7939687 | 1.00[EUR][1000 genomes] |
| rs7942307 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1051171 | chr11:62987064-63835715 | Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 100 gene(s) | inside rSNPs | diseases |
| 2 | nsv1053585 | chr11:63057767-63180308 | Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv555178 | chr11:63078742-63197930 | Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv1822068 | chr11:63146055-63239984 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv1053627 | chr11:63160057-63183395 | Flanking Active TSS Weak transcription Enhancers Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:63165200-63171400 | Weak transcription | HepG2 | liver |
| 2 | chr11:63168400-63171400 | Weak transcription | Liver | Liver |
