Variant report

Variant	rs57247740
Chromosome Location	chr11:63281769-63281770
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11820135	1.00[EUR][1000 genomes]
rs475053	1.00[EUR][1000 genomes]
rs501594	1.00[EUR][1000 genomes]
rs507893	1.00[EUR][1000 genomes]
rs55813757	1.00[EUR][1000 genomes]
rs56867396	1.00[EUR][1000 genomes]
rs57518967	1.00[EUR][1000 genomes]
rs577327	1.00[EUR][1000 genomes]
rs597483	1.00[EUR][1000 genomes]
rs60168208	1.00[EUR][1000 genomes]
rs60590185	1.00[EUR][1000 genomes]
rs61997169	1.00[EUR][1000 genomes]
rs655995	1.00[EUR][1000 genomes]
rs7103797	1.00[EUR][1000 genomes]
rs7123161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7128461	1.00[EUR][1000 genomes]
rs7935128	1.00[EUR][1000 genomes]
rs7939687	1.00[EUR][1000 genomes]
rs7942307	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468588	chr11:63233363-63320239	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv555179	chr11:63233363-63320239	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63275200-63286600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr11:63275600-63296400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:63276200-63284200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:63276600-63282000	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr11:63276600-63289400	Weak transcription	Spleen	Spleen
6	chr11:63276800-63289000	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr11:63279000-63284600	Weak transcription	Ovary	ovary
8	chr11:63279400-63286000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr11:63280000-63286200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:63281200-63283800	Weak transcription	Adipose Nuclei	Adipose
11	chr11:63281200-63289400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:63281400-63282800	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr11:63281600-63285600	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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