Variant report

Variant	rs652233
Chromosome Location	chr11:63379850-63379851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:63369471..63371233-chr11:63378331..63380556,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11826418	1.00[EUR][1000 genomes]
rs2030727	0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2030728	0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs558768	1.00[EUR][1000 genomes]
rs590570	0.91[AFR][1000 genomes]
rs592416	0.85[ASW][hapmap];0.81[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59485568	1.00[EUR][1000 genomes]
rs60027303	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs615155	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs663053	1.00[EUR][1000 genomes]
rs683904	1.00[EUR][1000 genomes]
rs684865	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7109362	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7935128	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	esv32927	chr11:63377277-63387923	Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63356800-63381000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr11:63357600-63380400	Weak transcription	NHLF	lung
3	chr11:63371000-63380400	Weak transcription	Aorta	Aorta
4	chr11:63374600-63380200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:63374800-63380400	Weak transcription	K562	blood
6	chr11:63375800-63380200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr11:63375800-63380400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:63376800-63380400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr11:63376800-63380400	Enhancers	A549	lung
10	chr11:63377000-63380400	Weak transcription	Fetal Kidney	kidney
11	chr11:63377200-63380400	Weak transcription	GM12878-XiMat	blood
12	chr11:63377400-63380400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr11:63377800-63380400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:63377800-63380400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr11:63377800-63380400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr11:63377800-63381000	Weak transcription	Esophagus	oesophagus
17	chr11:63378000-63380200	Enhancers	Liver	Liver
18	chr11:63378000-63380400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr11:63378000-63380400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr11:63378000-63380400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr11:63378000-63380600	Weak transcription	Pancreas	Pancrea
22	chr11:63378000-63381000	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr11:63378200-63380000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr11:63378200-63380400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr11:63378200-63380400	Weak transcription	Duodenum Mucosa	Duodenum
26	chr11:63378200-63380400	Weak transcription	Placenta	Placenta
27	chr11:63378200-63380400	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr11:63378200-63380600	Weak transcription	Lung	lung
29	chr11:63378400-63380400	Weak transcription	Colonic Mucosa	Colon
30	chr11:63378400-63380400	Weak transcription	Right Ventricle	heart
31	chr11:63378400-63380400	Weak transcription	HSMM	muscle
32	chr11:63378400-63380600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr11:63378400-63380600	Weak transcription	Psoas Muscle	Psoas
34	chr11:63378400-63380800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr11:63378400-63381000	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr11:63378400-63381000	Weak transcription	Gastric	stomach
37	chr11:63378400-63381000	Weak transcription	Spleen	Spleen
38	chr11:63378400-63381000	Weak transcription	HMEC	breast
39	chr11:63378400-63382400	Active TSS	Brain Angular Gyrus	brain
40	chr11:63378400-63382400	Active TSS	Ovary	ovary
41	chr11:63378600-63380400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr11:63378600-63380400	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr11:63378600-63380400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr11:63378600-63380400	Weak transcription	Fetal Muscle Leg	muscle
45	chr11:63378600-63380400	Weak transcription	Left Ventricle	heart
46	chr11:63378600-63380400	Weak transcription	NH-A	brain
47	chr11:63378600-63380600	Weak transcription	Small Intestine	intestine
48	chr11:63378600-63381000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:63378600-63381000	Weak transcription	Stomach Mucosa	stomach
50	chr11:63378800-63380600	Weak transcription	Primary T cells fromperipheralblood	blood

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