Variant report

Variant	rs663053
Chromosome Location	chr11:63370426-63370427
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:63369471..63371233-chr11:63378331..63380556,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11826418	1.00[EUR][1000 genomes]
rs2030727	1.00[EUR][1000 genomes]
rs2030728	1.00[EUR][1000 genomes]
rs558768	1.00[EUR][1000 genomes]
rs592416	1.00[EUR][1000 genomes]
rs59485568	1.00[EUR][1000 genomes]
rs60027303	1.00[EUR][1000 genomes]
rs615155	1.00[EUR][1000 genomes]
rs652233	1.00[EUR][1000 genomes]
rs683904	1.00[EUR][1000 genomes]
rs684865	1.00[EUR][1000 genomes]
rs7103797	1.00[AMR][1000 genomes]
rs7109362	1.00[EUR][1000 genomes]
rs72932276	1.00[AMR][1000 genomes]
rs7951450	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	esv33275	chr11:63368995-63370871	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63343000-63376600	Weak transcription	Colonic Mucosa	Colon
2	chr11:63350000-63375800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr11:63350200-63377000	Weak transcription	Hela-S3	cervix
4	chr11:63356800-63381000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:63357600-63380400	Weak transcription	NHLF	lung
6	chr11:63357800-63374200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:63358600-63370600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr11:63358800-63377000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:63359600-63375800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:63361200-63376800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr11:63361600-63373200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:63362000-63378000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr11:63363000-63377000	Weak transcription	Esophagus	oesophagus
14	chr11:63364400-63370800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr11:63364600-63376200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr11:63365600-63370800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr11:63365600-63373400	Weak transcription	Gastric	stomach
18	chr11:63365800-63370600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr11:63365800-63370800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr11:63366200-63370600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr11:63366400-63370800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr11:63366400-63370800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:63366400-63374400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr11:63366400-63376600	Weak transcription	Lung	lung
25	chr11:63366800-63370800	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr11:63366800-63375800	Weak transcription	Spleen	Spleen
27	chr11:63367000-63372800	Enhancers	Brain Cingulate Gyrus	brain
28	chr11:63367000-63377000	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr11:63367800-63370600	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr11:63367800-63370600	Weak transcription	Right Atrium	heart
31	chr11:63367800-63377600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:63368800-63372600	Enhancers	Brain Anterior Caudate	brain
33	chr11:63369000-63370600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr11:63369000-63370600	Enhancers	Adipose Nuclei	Adipose
35	chr11:63369000-63370800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
36	chr11:63369000-63371400	Enhancers	Brain Angular Gyrus	brain
37	chr11:63369000-63374800	Enhancers	Brain Substantia Nigra	brain
38	chr11:63369200-63371400	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr11:63369200-63371600	Enhancers	Ovary	ovary
40	chr11:63369400-63371600	Enhancers	Left Ventricle	heart
41	chr11:63369400-63371800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr11:63369400-63372800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr11:63369600-63370600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr11:63369600-63370800	Enhancers	Fetal Muscle Leg	muscle
45	chr11:63369600-63371000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:63369600-63371000	Enhancers	Aorta	Aorta
47	chr11:63369600-63371200	Enhancers	Muscle Satellite Cultured Cells	--
48	chr11:63369600-63371200	Enhancers	Colon Smooth Muscle	Colon
49	chr11:63369600-63371400	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr11:63369600-63371400	Enhancers	HepG2	liver

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