Variant report

Variant	rs7109362
Chromosome Location	chr11:63431526-63431527
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:63426722..63428265-chr11:63429483..63431939,2	K562	blood:
2	chr11:63428788..63435912-chr11:63436181..63441265,9	MCF-7	breast:
3	chr11:63428927..63432023-chr11:63433966..63440165,8	K562	blood:
4	chr11:63429933..63433001-chr11:63436097..63439053,5	K562	blood:

Variant related genes	Relation type
ENSG00000184743	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11826418	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2030727	1.00[EUR][1000 genomes]
rs2030728	1.00[EUR][1000 genomes]
rs520908	0.82[ASW][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs558768	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs592416	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs59485568	1.00[EUR][1000 genomes]
rs60027303	1.00[EUR][1000 genomes]
rs615155	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs652233	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs663053	1.00[EUR][1000 genomes]
rs683904	1.00[EUR][1000 genomes]
rs684865	1.00[ASW][hapmap];1.00[LWK][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7935128	1.00[TSI][hapmap]
rs9804541	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv832183	chr11:63416678-63564565	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63399000-63434000	Weak transcription	Small Intestine	intestine
2	chr11:63399200-63433800	Weak transcription	Fetal Heart	heart
3	chr11:63399800-63437800	Weak transcription	Fetal Brain Female	brain
4	chr11:63400400-63437600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:63410800-63435000	Weak transcription	Stomach Mucosa	stomach
6	chr11:63411000-63435200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr11:63411000-63437800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:63411200-63437000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr11:63414600-63435600	Weak transcription	Thymus	Thymus
10	chr11:63414600-63437400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr11:63418600-63435400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr11:63418600-63435400	Weak transcription	Colonic Mucosa	Colon
13	chr11:63418600-63437600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr11:63418600-63437600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr11:63418800-63435600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr11:63419200-63434600	Weak transcription	Gastric	stomach
17	chr11:63419200-63435400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr11:63419200-63437200	Weak transcription	Fetal Lung	lung
19	chr11:63420400-63437600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr11:63420600-63437400	Weak transcription	Brain Germinal Matrix	brain
21	chr11:63421600-63436800	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr11:63423000-63435000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr11:63423200-63435000	Weak transcription	Fetal Intestine Large	intestine
24	chr11:63423400-63438000	Weak transcription	Fetal Thymus	thymus
25	chr11:63423600-63435200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr11:63425000-63433400	Weak transcription	Esophagus	oesophagus
27	chr11:63425000-63435800	Weak transcription	Primary B cells from cord blood	blood
28	chr11:63425000-63437200	Weak transcription	Primary hematopoietic stem cells	blood
29	chr11:63425200-63437600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:63425600-63437800	Weak transcription	Fetal Intestine Small	intestine
31	chr11:63426200-63435400	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr11:63426200-63437600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr11:63426200-63437600	Weak transcription	Fetal Kidney	kidney
34	chr11:63426400-63435200	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr11:63426400-63435400	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr11:63426400-63435400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr11:63426400-63435400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr11:63426400-63435400	Weak transcription	Liver	Liver
39	chr11:63426400-63435400	Weak transcription	Duodenum Mucosa	Duodenum
40	chr11:63426400-63437200	Weak transcription	Placenta	Placenta
41	chr11:63426600-63435800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr11:63426800-63434000	Weak transcription	Dnd41	blood
43	chr11:63426800-63434200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr11:63426800-63435200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr11:63426800-63437000	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr11:63427000-63435200	Weak transcription	Primary T cells from cord blood	blood
47	chr11:63427000-63436800	Weak transcription	Fetal Muscle Trunk	muscle
48	chr11:63427400-63433000	Weak transcription	Fetal Stomach	stomach
49	chr11:63427400-63433200	Weak transcription	Fetal Muscle Leg	muscle
50	chr11:63428800-63434600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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