Variant report

Variant	rs9804541
Chromosome Location	chr11:63590041-63590042
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:63588841..63591602-chr11:63602435..63604599,2	MCF-7	breast:
2	chr11:63580313..63583288-chr11:63588012..63590862,2	K562	blood:
3	chr11:63585442..63588952-chr11:63589887..63594344,4	K562	blood:
4	chr11:63589614..63591449-chr11:63633578..63635486,2	K562	blood:
5	chr11:63582237..63585723-chr11:63588277..63590938,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168005	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10897460	1.00[TSI][hapmap]
rs12099085	1.00[TSI][hapmap]
rs12271959	1.00[TSI][hapmap]
rs12275057	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17158606	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17403349	1.00[TSI][hapmap]
rs320110	1.00[TSI][hapmap]
rs320115	1.00[TSI][hapmap]
rs684865	1.00[TSI][hapmap]
rs7109362	1.00[TSI][hapmap]
rs7123788	1.00[TSI][hapmap]
rs7933899	1.00[TSI][hapmap]
rs7948681	1.00[TSI][hapmap]
rs7952003	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63582200-63604600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:63582400-63604800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr11:63582600-63592200	Weak transcription	Stomach Mucosa	stomach
4	chr11:63582600-63604800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr11:63582600-63604800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr11:63582800-63591800	Weak transcription	Primary B cells from cord blood	blood
7	chr11:63582800-63593600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr11:63582800-63595800	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:63582800-63596400	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr11:63583000-63591000	Strong transcription	Primary hematopoietic stem cells	blood
11	chr11:63583000-63592600	Weak transcription	Psoas Muscle	Psoas
12	chr11:63583000-63594400	Strong transcription	HSMM	muscle
13	chr11:63583000-63594600	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr11:63583000-63595400	Strong transcription	Thymus	Thymus
15	chr11:63583000-63596200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:63583000-63596400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr11:63583000-63596800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:63583000-63597000	Strong transcription	Brain Cingulate Gyrus	brain
19	chr11:63583000-63597200	Strong transcription	Fetal Muscle Leg	muscle
20	chr11:63583200-63594800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:63583200-63595000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
22	chr11:63583200-63595400	Strong transcription	H1 Cell Line	embryonic stem cell
23	chr11:63583200-63596200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr11:63583200-63596200	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr11:63583200-63596200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:63583200-63596400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr11:63583200-63597200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:63583400-63594600	Strong transcription	Muscle Satellite Cultured Cells	--
29	chr11:63583400-63594800	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:63583400-63596400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr11:63583400-63596400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr11:63583400-63596400	Strong transcription	Fetal Intestine Small	intestine
33	chr11:63583600-63590600	Strong transcription	Fetal Lung	lung
34	chr11:63583600-63592200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr11:63583600-63592200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr11:63583600-63594800	Strong transcription	Brain Inferior Temporal Lobe	brain
37	chr11:63583600-63595000	Strong transcription	H9 Cell Line	embryonic stem cell
38	chr11:63583600-63595000	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr11:63583600-63595000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr11:63583600-63595400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr11:63583600-63595400	Strong transcription	Duodenum Smooth Muscle	Duodenum
42	chr11:63583600-63595400	Strong transcription	NHLF	lung
43	chr11:63583600-63596200	Strong transcription	Brain Hippocampus Middle	brain
44	chr11:63583600-63596400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr11:63583600-63596400	Strong transcription	Fetal Muscle Trunk	muscle
46	chr11:63583600-63596800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr11:63583600-63604600	Weak transcription	Fetal Brain Male	brain
48	chr11:63583800-63590200	Strong transcription	Fetal Thymus	thymus
49	chr11:63583800-63592600	Strong transcription	Colonic Mucosa	Colon
50	chr11:63583800-63594400	Strong transcription	Primary T cells from cord blood	blood

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