Variant report

Variant	rs7933899
Chromosome Location	chr11:63711388-63711389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:63682242..63690244-chr11:63703955..63713214,18	K562	blood:
2	chr11:63706123..63708647-chr11:63708670..63712946,5	MCF-7	breast:
3	chr11:63604899..63606828-chr11:63710269..63712608,2	K562	blood:
4	chr11:63683456..63690158-chr11:63704393..63714412,17	K562	blood:
5	chr11:63605242..63608027-chr11:63711058..63713098,3	K562	blood:
6	chr11:63709857..63711597-chr11:63715784..63718526,2	K562	blood:
7	chr11:63704165..63707405-chr11:63709162..63713510,4	K562	blood:
8	chr11:63710236..63713090-chr11:63721173..63723810,3	K562	blood:
9	chr11:63604963..63607370-chr11:63711128..63713455,3	MCF-7	breast:
10	chr11:63704405..63708949-chr11:63710119..63713383,6	MCF-7	breast:
11	chr11:63710236..63713268-chr11:63721628..63723810,3	K562	blood:
12	chr11:63708455..63711957-chr11:63724529..63727502,3	K562	blood:
13	chr11:63708705..63711538-chr11:63713648..63715559,2	K562	blood:
14	chr11:63682858..63685313-chr11:63711192..63714152,2	MCF-7	breast:
15	chr11:63606077..63607592-chr11:63709875..63711519,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000110583	Chromatin interaction
ENSG00000167771	Chromatin interaction
ENSG00000072518	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10897460	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11231632	1.00[EUR][1000 genomes]
rs11231634	1.00[EUR][1000 genomes]
rs11231665	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs11231673	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs11494059	0.83[AMR][1000 genomes]
rs12099085	0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12271959	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12277386	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12277838	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12285283	1.00[AMR][1000 genomes]
rs12288290	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12291042	1.00[EUR][1000 genomes]
rs12295918	1.00[EUR][1000 genomes]
rs13377315	1.00[EUR][1000 genomes]
rs17403349	1.00[ASW][hapmap];0.94[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs320110	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs320115	1.00[TSI][hapmap]
rs34689425	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56217591	1.00[AMR][1000 genomes]
rs57219930	1.00[EUR][1000 genomes]
rs57864399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57868637	1.00[AMR][1000 genomes]
rs58678024	1.00[EUR][1000 genomes]
rs59423787	1.00[EUR][1000 genomes]
rs59502039	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59642000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60107756	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61475860	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61653882	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7110433	1.00[EUR][1000 genomes]
rs7123788	1.00[TSI][hapmap]
rs7929867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7938631	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7948681	0.82[ASW][hapmap];0.83[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7952003	0.82[ASW][hapmap];0.84[LWK][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9326430	1.00[AMR][1000 genomes]
rs9630214	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9630215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9804541	1.00[TSI][hapmap]
rs9888136	1.00[EUR][1000 genomes]
rs9888177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv468590	chr11:63639881-63783352	Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	nsv555181	chr11:63639881-63783352	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv897629	chr11:63664882-63866959	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
7	nsv897630	chr11:63664882-63924446	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
8	nsv897631	chr11:63664882-64129722	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	254 gene(s)	inside rSNPs	diseases
9	nsv897639	chr11:63691049-63844683	Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63707200-63724200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:63707400-63712400	Weak transcription	Esophagus	oesophagus
3	chr11:63707400-63712400	Weak transcription	Ovary	ovary
4	chr11:63707400-63712400	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr11:63707400-63712600	Weak transcription	Aorta	Aorta
6	chr11:63707400-63713400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr11:63707400-63713800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:63707400-63713800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr11:63707400-63719600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:63707400-63721400	Weak transcription	Small Intestine	intestine
11	chr11:63707600-63711400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:63707600-63711800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr11:63707600-63711800	Weak transcription	NHLF	lung
14	chr11:63707600-63712000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:63707600-63712400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:63707600-63712400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr11:63707600-63712400	Weak transcription	Liver	Liver
18	chr11:63707600-63712400	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr11:63707600-63712400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr11:63707600-63712400	Weak transcription	Osteobl	bone
21	chr11:63707600-63712600	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr11:63707600-63713000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr11:63707600-63713200	Weak transcription	Fetal Kidney	kidney
24	chr11:63707600-63713200	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr11:63707600-63713600	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr11:63707600-63713800	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr11:63707600-63713800	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr11:63707600-63719400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr11:63707600-63720200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr11:63707800-63713000	Enhancers	Duodenum Mucosa	Duodenum
31	chr11:63707800-63719200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr11:63707800-63719600	Weak transcription	Lung	lung
33	chr11:63708000-63711400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr11:63708000-63711600	Weak transcription	Stomach Smooth Muscle	stomach
35	chr11:63708000-63711800	Weak transcription	HSMM	muscle
36	chr11:63708000-63711800	Weak transcription	HSMMtube	muscle
37	chr11:63708000-63712000	Weak transcription	Adipose Nuclei	Adipose
38	chr11:63708000-63712200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr11:63708000-63712400	Weak transcription	Pancreas	Pancrea
40	chr11:63708000-63712600	Weak transcription	Stomach Mucosa	stomach
41	chr11:63708000-63713000	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr11:63708000-63713200	Weak transcription	NHEK	skin
43	chr11:63708000-63713800	Weak transcription	HMEC	breast
44	chr11:63708000-63713800	Weak transcription	HUVEC	blood vessel
45	chr11:63708000-63714000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr11:63708000-63714000	Weak transcription	Gastric	stomach
47	chr11:63708000-63718200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr11:63708200-63711800	Weak transcription	Brain Hippocampus Middle	brain
49	chr11:63708200-63713400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr11:63708200-63713600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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