Variant report

Variant	rs58678024
Chromosome Location	chr11:63660501-63660502
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:63604952..63606733-chr11:63659369..63661422,2	MCF-7	breast:
2	chr11:63654741..63658030-chr11:63658111..63661032,3	K562	blood:

Variant related genes	Relation type
ENSG00000072518	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10897460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11231632	1.00[EUR][1000 genomes]
rs11231634	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12099085	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271959	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277386	1.00[EUR][1000 genomes]
rs12277838	1.00[EUR][1000 genomes]
rs12288290	1.00[EUR][1000 genomes]
rs12291042	1.00[EUR][1000 genomes]
rs12295918	1.00[EUR][1000 genomes]
rs13377315	1.00[EUR][1000 genomes]
rs1392118	0.91[ASN][1000 genomes]
rs320110	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs320115	1.00[ASN][1000 genomes]
rs57219930	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57864399	1.00[EUR][1000 genomes]
rs59423787	1.00[EUR][1000 genomes]
rs59642000	1.00[EUR][1000 genomes]
rs60107756	1.00[EUR][1000 genomes]
rs60791209	0.91[ASN][1000 genomes]
rs61141225	0.91[ASN][1000 genomes]
rs61475860	1.00[EUR][1000 genomes]
rs7110433	1.00[EUR][1000 genomes]
rs73494120	1.00[ASN][1000 genomes]
rs7929867	1.00[EUR][1000 genomes]
rs7933899	1.00[EUR][1000 genomes]
rs7948681	1.00[EUR][1000 genomes]
rs7952003	1.00[EUR][1000 genomes]
rs9630214	1.00[EUR][1000 genomes]
rs9630215	1.00[EUR][1000 genomes]
rs9888136	1.00[EUR][1000 genomes]
rs9888177	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	esv1839119	chr11:63615554-63680052	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv468590	chr11:63639881-63783352	Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv555181	chr11:63639881-63783352	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63654800-63664000	Weak transcription	Fetal Brain Male	brain
2	chr11:63655800-63662200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:63655800-63662600	Weak transcription	HSMMtube	muscle
4	chr11:63655800-63664200	Weak transcription	NHDF-Ad	bronchial
5	chr11:63656000-63663400	Weak transcription	Fetal Heart	heart
6	chr11:63656200-63660800	Weak transcription	Hela-S3	cervix
7	chr11:63656200-63662400	Weak transcription	NHLF	lung
8	chr11:63656200-63663600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:63656200-63663600	Weak transcription	Aorta	Aorta
10	chr11:63656200-63664000	Weak transcription	NH-A	brain
11	chr11:63656400-63660800	Weak transcription	A549	lung
12	chr11:63656400-63662200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr11:63656400-63662200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:63656400-63662200	Weak transcription	Ovary	ovary
15	chr11:63656400-63662800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr11:63656400-63663400	Weak transcription	HSMM	muscle
17	chr11:63656400-63663400	Weak transcription	HUVEC	blood vessel
18	chr11:63656400-63665400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:63656600-63662400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr11:63656600-63662400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr11:63656600-63662600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr11:63656600-63662600	Weak transcription	Osteobl	bone
23	chr11:63656600-63663800	Weak transcription	Fetal Kidney	kidney
24	chr11:63656800-63660800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:63656800-63660800	Weak transcription	Fetal Lung	lung
26	chr11:63656800-63662200	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr11:63656800-63662600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr11:63656800-63662600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:63656800-63662800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr11:63656800-63663400	Weak transcription	Small Intestine	intestine
31	chr11:63656800-63665800	Weak transcription	Psoas Muscle	Psoas
32	chr11:63657000-63662400	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr11:63657000-63662400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr11:63657000-63662400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:63657000-63662600	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr11:63657000-63670000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr11:63657200-63662200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr11:63657200-63662200	Weak transcription	Adipose Nuclei	Adipose
39	chr11:63657400-63662600	Weak transcription	Colon Smooth Muscle	Colon
40	chr11:63657400-63677800	Strong transcription	Dnd41	blood
41	chr11:63657600-63660800	Enhancers	Primary T killer memory cells from peripheral blood	blood
42	chr11:63658000-63662400	Weak transcription	Rectal Smooth Muscle	rectum
43	chr11:63658000-63662600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr11:63658000-63663600	Weak transcription	Right Atrium	heart
45	chr11:63658200-63661000	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr11:63658200-63661200	Genic enhancers	Primary T cells from cord blood	blood
47	chr11:63658200-63662400	Weak transcription	Placenta	Placenta
48	chr11:63658200-63664000	Weak transcription	HMEC	breast
49	chr11:63658400-63660800	Enhancers	Primary T helper cells fromperipheralblood	blood
50	chr11:63658800-63678400	Strong transcription	Primary B cells from cord blood	blood

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