Variant report

Variant	rs59423787
Chromosome Location	chr11:63610149-63610150
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:63608154..63610966-chr11:64109676..64111363,2	K562	blood:
2	chr11:63579651..63582051-chr11:63608159..63610304,2	MCF-7	breast:
3	chr11:63607856..63610979-chr11:63704708..63707204,3	MCF-7	breast:
4	chr11:63607750..63611534-chr11:63627673..63634127,5	MCF-7	breast:
5	chr11:63607647..63610591-chr11:63667055..63669297,3	MCF-7	breast:
6	chr11:63603311..63612666-chr11:63664740..63679491,25	MCF-7	breast:
7	chr11:63607143..63610825-chr11:63931420..63934315,4	MCF-7	breast:
8	chr11:63608840..63610534-chr11:63656081..63658372,2	MCF-7	breast:
9	chr11:63609085..63610826-chr11:63629882..63631778,2	K562	blood:
10	chr11:63603344..63615182-chr11:63634321..63647771,46	MCF-7	breast:
11	chr11:63608184..63610790-chr11:63772494..63774086,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000168005	Chromatin interaction
ENSG00000133315	Chromatin interaction
ENSG00000072518	Chromatin interaction
ENSG00000110583	Chromatin interaction
ENSG00000168071	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10897460	1.00[EUR][1000 genomes]
rs11231632	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11231634	1.00[EUR][1000 genomes]
rs12099085	1.00[EUR][1000 genomes]
rs12271959	1.00[EUR][1000 genomes]
rs12277386	1.00[EUR][1000 genomes]
rs12277838	1.00[EUR][1000 genomes]
rs12288290	1.00[EUR][1000 genomes]
rs12291042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12295918	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13377315	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs320110	1.00[EUR][1000 genomes]
rs57219930	1.00[EUR][1000 genomes]
rs57864399	1.00[EUR][1000 genomes]
rs58678024	1.00[EUR][1000 genomes]
rs59642000	1.00[EUR][1000 genomes]
rs60107756	1.00[EUR][1000 genomes]
rs61475860	1.00[EUR][1000 genomes]
rs7110433	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7929867	1.00[EUR][1000 genomes]
rs7933899	1.00[EUR][1000 genomes]
rs7948681	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7952003	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9630214	1.00[EUR][1000 genomes]
rs9630215	1.00[EUR][1000 genomes]
rs9888136	1.00[EUR][1000 genomes]
rs9888177	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63608200-63613400	Enhancers	Stomach Mucosa	stomach
2	chr11:63608400-63610600	Enhancers	Fetal Heart	heart
3	chr11:63608400-63611000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:63608400-63618600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:63608800-63610600	Genic enhancers	Sigmoid Colon	Sigmoid Colon
6	chr11:63608800-63611000	Genic enhancers	Primary hematopoietic stem cells	blood
7	chr11:63608800-63611000	Genic enhancers	Fetal Thymus	thymus
8	chr11:63608800-63611000	Enhancers	Left Ventricle	heart
9	chr11:63608800-63611600	Enhancers	Right Atrium	heart
10	chr11:63609000-63610800	Enhancers	Colon Smooth Muscle	Colon
11	chr11:63609000-63610800	Genic enhancers	Fetal Lung	lung
12	chr11:63609000-63611800	Genic enhancers	Primary B cells from peripheral blood	blood
13	chr11:63609000-63611800	Enhancers	Liver	Liver
14	chr11:63609000-63611800	Genic enhancers	Fetal Stomach	stomach
15	chr11:63609000-63612000	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr11:63609000-63612400	Weak transcription	Right Ventricle	heart
17	chr11:63609000-63612600	Genic enhancers	Placenta	Placenta
18	chr11:63609000-63613200	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr11:63609000-63613200	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
20	chr11:63609200-63610400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:63609200-63610400	Strong transcription	Fetal Muscle Leg	muscle
22	chr11:63609200-63610600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr11:63609200-63610600	Enhancers	Adipose Nuclei	Adipose
24	chr11:63609200-63610600	Weak transcription	Lung	lung
25	chr11:63609200-63611000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr11:63609200-63611200	Weak transcription	Aorta	Aorta
27	chr11:63609200-63611400	Enhancers	Brain Hippocampus Middle	brain
28	chr11:63609200-63612400	Genic enhancers	Primary monocytes fromperipheralblood	blood
29	chr11:63609200-63613000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:63609200-63613400	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr11:63609200-63613400	Genic enhancers	Primary T cells fromperipheralblood	blood
32	chr11:63609200-63613600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr11:63609200-63613600	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr11:63609200-63613800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
35	chr11:63609200-63616600	Genic enhancers	Fetal Intestine Small	intestine
36	chr11:63609400-63610200	Enhancers	Muscle Satellite Cultured Cells	--
37	chr11:63609400-63610200	Enhancers	Fetal Kidney	kidney
38	chr11:63609400-63610400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr11:63609400-63610400	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr11:63609400-63610400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr11:63609400-63610400	Weak transcription	Small Intestine	intestine
42	chr11:63609400-63610400	Enhancers	Stomach Smooth Muscle	stomach
43	chr11:63609400-63610600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr11:63609400-63610600	Enhancers	Brain Anterior Caudate	brain
45	chr11:63609400-63610600	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr11:63609400-63610600	Genic enhancers	Rectal Mucosa Donor 31	rectum
47	chr11:63609400-63610800	Enhancers	HepG2	liver
48	chr11:63609400-63611000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr11:63609400-63611000	Genic enhancers	Primary neutrophils fromperipheralblood	blood
50	chr11:63609400-63611000	Enhancers	Brain Substantia Nigra	brain

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