Variant report

Variant	rs10897460
Chromosome Location	chr11:63662356-63662357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:63661829..63663997-chr11:63667272..63670174,2	MCF-7	breast:
2	chr11:63655513..63657526-chr11:63661698..63663347,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000072518	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11231632	1.00[EUR][1000 genomes]
rs11231634	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11822339	1.00[JPT][hapmap]
rs12099085	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271959	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277386	1.00[EUR][1000 genomes]
rs12277838	1.00[EUR][1000 genomes]
rs12288290	1.00[EUR][1000 genomes]
rs12291042	1.00[EUR][1000 genomes]
rs12295918	1.00[EUR][1000 genomes]
rs13377315	1.00[EUR][1000 genomes]
rs1392118	0.91[ASN][1000 genomes]
rs17403349	1.00[TSI][hapmap]
rs2133548	1.00[JPT][hapmap]
rs320110	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs320115	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs57219930	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57864399	1.00[EUR][1000 genomes]
rs58678024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59423787	1.00[EUR][1000 genomes]
rs59642000	1.00[EUR][1000 genomes]
rs60107756	1.00[EUR][1000 genomes]
rs60791209	0.91[ASN][1000 genomes]
rs61141225	0.91[ASN][1000 genomes]
rs61475860	1.00[EUR][1000 genomes]
rs684865	1.00[TSI][hapmap]
rs7110433	1.00[EUR][1000 genomes]
rs7123788	1.00[TSI][hapmap]
rs7127354	1.00[GIH][hapmap];1.00[JPT][hapmap]
rs7130187	1.00[GIH][hapmap];1.00[JPT][hapmap]
rs73494120	1.00[ASN][1000 genomes]
rs7929867	1.00[EUR][1000 genomes]
rs7933899	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7948681	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7952003	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9630214	1.00[EUR][1000 genomes]
rs9630215	1.00[EUR][1000 genomes]
rs9804541	1.00[TSI][hapmap]
rs9888136	1.00[EUR][1000 genomes]
rs9888177	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	esv1839119	chr11:63615554-63680052	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv468590	chr11:63639881-63783352	Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv555181	chr11:63639881-63783352	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63654800-63664000	Weak transcription	Fetal Brain Male	brain
2	chr11:63655800-63662600	Weak transcription	HSMMtube	muscle
3	chr11:63655800-63664200	Weak transcription	NHDF-Ad	bronchial
4	chr11:63656000-63663400	Weak transcription	Fetal Heart	heart
5	chr11:63656200-63662400	Weak transcription	NHLF	lung
6	chr11:63656200-63663600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:63656200-63663600	Weak transcription	Aorta	Aorta
8	chr11:63656200-63664000	Weak transcription	NH-A	brain
9	chr11:63656400-63662800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr11:63656400-63663400	Weak transcription	HSMM	muscle
11	chr11:63656400-63663400	Weak transcription	HUVEC	blood vessel
12	chr11:63656400-63665400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:63656600-63662400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr11:63656600-63662400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr11:63656600-63662600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr11:63656600-63662600	Weak transcription	Osteobl	bone
17	chr11:63656600-63663800	Weak transcription	Fetal Kidney	kidney
18	chr11:63656800-63662600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr11:63656800-63662600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:63656800-63662800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr11:63656800-63663400	Weak transcription	Small Intestine	intestine
22	chr11:63656800-63665800	Weak transcription	Psoas Muscle	Psoas
23	chr11:63657000-63662400	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr11:63657000-63662400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr11:63657000-63662400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:63657000-63662600	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr11:63657000-63670000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr11:63657400-63662600	Weak transcription	Colon Smooth Muscle	Colon
29	chr11:63657400-63677800	Strong transcription	Dnd41	blood
30	chr11:63658000-63662400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr11:63658000-63662600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr11:63658000-63663600	Weak transcription	Right Atrium	heart
33	chr11:63658200-63662400	Weak transcription	Placenta	Placenta
34	chr11:63658200-63664000	Weak transcription	HMEC	breast
35	chr11:63658800-63678400	Strong transcription	Primary B cells from cord blood	blood
36	chr11:63659200-63662400	Weak transcription	Right Ventricle	heart
37	chr11:63659200-63662400	Weak transcription	Spleen	Spleen
38	chr11:63659200-63665000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr11:63659400-63678600	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr11:63659600-63662600	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr11:63659600-63662600	Weak transcription	Left Ventricle	heart
42	chr11:63659600-63665400	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr11:63659600-63680600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr11:63659800-63662400	Weak transcription	Colonic Mucosa	Colon
45	chr11:63659800-63662400	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr11:63659800-63662400	Weak transcription	Esophagus	oesophagus
47	chr11:63659800-63662400	Weak transcription	Pancreas	Pancrea
48	chr11:63659800-63662600	Weak transcription	Brain Hippocampus Middle	brain
49	chr11:63659800-63678000	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr11:63659800-63682400	Strong transcription	Fetal Intestine Large	intestine

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