Variant report

Variant	rs684865
Chromosome Location	chr11:63485950-63485951
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:63475402..63478468-chr11:63484707..63487659,3	K562	blood:
2	chr11:63476721..63479667-chr11:63483897..63486207,2	K562	blood:
3	chr11:63485183..63488338-chr11:63489769..63491741,3	K562	blood:
4	chr11:63485885..63488439-chr11:63488604..63490732,2	MCF-7	breast:
5	chr11:63485679..63487280-chr11:63490082..63491606,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10897460	1.00[TSI][hapmap]
rs11826418	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12099085	1.00[TSI][hapmap]
rs12271959	1.00[TSI][hapmap]
rs2030727	1.00[EUR][1000 genomes]
rs2030728	1.00[EUR][1000 genomes]
rs320110	1.00[TSI][hapmap]
rs520908	0.82[ASW][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs558768	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs592416	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs59485568	1.00[EUR][1000 genomes]
rs60027303	1.00[EUR][1000 genomes]
rs615155	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs652233	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs663053	1.00[EUR][1000 genomes]
rs683904	1.00[EUR][1000 genomes]
rs7109362	1.00[ASW][hapmap];1.00[LWK][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7123788	1.00[TSI][hapmap]
rs7948681	1.00[TSI][hapmap]
rs7952003	1.00[TSI][hapmap]
rs9804541	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv832183	chr11:63416678-63564565	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv897628	chr11:63456478-63508334	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63450800-63517400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr11:63451200-63486400	Weak transcription	Primary T cells from cord blood	blood
3	chr11:63452000-63486400	Weak transcription	Fetal Thymus	thymus
4	chr11:63456800-63490000	Weak transcription	Primary B cells from cord blood	blood
5	chr11:63459600-63516600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:63463200-63516200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr11:63464200-63489600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr11:63466200-63490000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:63466800-63486800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr11:63467400-63486600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:63467400-63497200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr11:63467600-63486200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr11:63467600-63486400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr11:63467600-63486400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr11:63467600-63486400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:63467600-63488200	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr11:63467600-63489200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:63467600-63489800	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr11:63467600-63516000	Weak transcription	Thymus	Thymus
20	chr11:63467600-63517600	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr11:63467800-63486200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr11:63467800-63486400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr11:63469200-63486400	Weak transcription	Psoas Muscle	Psoas
24	chr11:63469400-63497600	Weak transcription	Left Ventricle	heart
25	chr11:63472400-63486000	Weak transcription	GM12878-XiMat	blood
26	chr11:63473000-63488800	Weak transcription	Esophagus	oesophagus
27	chr11:63473000-63516000	Weak transcription	Lung	lung
28	chr11:63473000-63518000	Weak transcription	Aorta	Aorta
29	chr11:63473000-63529400	Weak transcription	Right Ventricle	heart
30	chr11:63473200-63487200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr11:63473200-63487800	Weak transcription	Brain Germinal Matrix	brain
32	chr11:63474800-63501200	Weak transcription	Fetal Stomach	stomach
33	chr11:63476600-63486400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr11:63477000-63486600	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr11:63477000-63487600	Weak transcription	NH-A	brain
36	chr11:63477200-63486200	Weak transcription	NHEK	skin
37	chr11:63477400-63486600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr11:63477400-63498000	Weak transcription	NHLF	lung
39	chr11:63477800-63487200	Weak transcription	Brain Cingulate Gyrus	brain
40	chr11:63478200-63486400	Weak transcription	Primary hematopoietic stem cells	blood
41	chr11:63478200-63486600	Weak transcription	Brain Angular Gyrus	brain
42	chr11:63478400-63486200	Weak transcription	Brain Hippocampus Middle	brain
43	chr11:63478400-63486800	Weak transcription	NHDF-Ad	bronchial
44	chr11:63478400-63487200	Weak transcription	Brain Anterior Caudate	brain
45	chr11:63478400-63488600	Weak transcription	HSMMtube	muscle
46	chr11:63478400-63492400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr11:63478400-63493600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr11:63478400-63496000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr11:63478400-63496400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr11:63478600-63486400	Weak transcription	Brain Inferior Temporal Lobe	brain

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