Variant report

Variant	rs7123788
Chromosome Location	chr11:63635482-63635483
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:63603344..63615182-chr11:63634321..63647771,46	MCF-7	breast:
2	chr11:63628759..63635867-chr11:63636847..63643133,8	K562	blood:
3	chr11:63634093..63635868-chr11:63638259..63640200,2	MCF-7	breast:
4	chr11:63604982..63606649-chr11:63633551..63637040,3	K562	blood:
5	chr11:63610591..63619595-chr11:63634759..63639809,13	MCF-7	breast:
6	chr11:63589614..63591449-chr11:63633578..63635486,2	K562	blood:
7	chr11:63604963..63609785-chr11:63634052..63642181,26	MCF-7	breast:
8	chr11:63604248..63606622-chr11:63634947..63637040,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000072518	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10897460	1.00[TSI][hapmap]
rs12099085	1.00[TSI][hapmap]
rs12271959	1.00[TSI][hapmap]
rs17403349	1.00[TSI][hapmap]
rs2318126	0.86[LWK][hapmap]
rs320110	1.00[TSI][hapmap]
rs320115	1.00[TSI][hapmap]
rs684865	1.00[TSI][hapmap]
rs7933899	1.00[TSI][hapmap]
rs7948681	1.00[TSI][hapmap]
rs7952003	1.00[TSI][hapmap]
rs9804541	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	esv1839119	chr11:63615554-63680052	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63615800-63636000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:63615800-63636000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr11:63615800-63636000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:63619200-63638000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:63619400-63639400	Weak transcription	Ovary	ovary
6	chr11:63619600-63636000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:63619600-63636000	Weak transcription	HSMMtube	muscle
8	chr11:63619600-63639200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:63626400-63637800	Weak transcription	NH-A	brain
10	chr11:63626800-63636000	Weak transcription	Psoas Muscle	Psoas
11	chr11:63628800-63644200	Genic enhancers	Fetal Intestine Small	intestine
12	chr11:63629600-63638800	Enhancers	Stomach Mucosa	stomach
13	chr11:63629800-63635600	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr11:63629800-63636200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr11:63630000-63640000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr11:63630200-63636800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr11:63630600-63636000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr11:63630600-63636000	Weak transcription	NHDF-Ad	bronchial
19	chr11:63630600-63642200	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr11:63630800-63635600	Weak transcription	HUVEC	blood vessel
21	chr11:63630800-63636000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:63630800-63636000	Weak transcription	Brain Germinal Matrix	brain
23	chr11:63630800-63636000	Weak transcription	Stomach Smooth Muscle	stomach
24	chr11:63630800-63637000	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr11:63630800-63637400	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr11:63630800-63637600	Weak transcription	Aorta	Aorta
27	chr11:63630800-63639400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:63630800-63641600	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr11:63631200-63635800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:63632200-63637400	Enhancers	Primary T cells fromperipheralblood	blood
31	chr11:63632400-63636000	Enhancers	Thymus	Thymus
32	chr11:63632400-63637000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr11:63632400-63638800	Genic enhancers	Fetal Thymus	thymus
34	chr11:63632400-63642600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr11:63632400-63643400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr11:63632400-63643600	Enhancers	Pancreas	Pancrea
37	chr11:63632600-63636000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr11:63632600-63636000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr11:63632600-63636200	Enhancers	Brain Cingulate Gyrus	brain
40	chr11:63632600-63637200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr11:63632600-63639400	Enhancers	Rectal Mucosa Donor 31	rectum
42	chr11:63632600-63640800	Enhancers	Placenta	Placenta
43	chr11:63632800-63636000	Enhancers	Brain Anterior Caudate	brain
44	chr11:63632800-63636200	Enhancers	Primary hematopoietic stem cells	blood
45	chr11:63633000-63635600	Weak transcription	Esophagus	oesophagus
46	chr11:63633000-63636000	Weak transcription	Lung	lung
47	chr11:63633000-63639200	Weak transcription	HepG2	liver
48	chr11:63633000-63639800	Enhancers	Fetal Heart	heart
49	chr11:63633000-63646800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:63633000-63646800	Weak transcription	Fetal Brain Female	brain

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